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Gm43645 Gene Detail
Summary
  • Symbol
    Gm43645
  • Name
    predicted gene 43645
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5663782
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr5:138205770-138206234 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 5, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    60 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5663782
lncRNA gene Chr5:138205770-138206234 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006841
lincRNA gene Chr5:143003744-143004208 (+)
A/J MGP_AJ_G0006835
lincRNA gene Chr5:136914987-136915451 (+)
AKR/J MGP_AKRJ_G0006805
lincRNA gene Chr5:141287468-141287932 (+)
BALB/cJ MGP_BALBcJ_G0006811
lincRNA gene Chr5:138216671-138217135 (+)
C3H/HeJ MGP_C3HHeJ_G0006756
lincRNA gene Chr5:141957340-141957804 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006975
lincRNA gene Chr5:148356814-148357278 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006227
lincRNA gene Chr5:130957644-130958109 (+)
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0006738
lincRNA gene Chr5:154297878-154298347 (-)
DBA/2J MGP_DBA2J_G0006758
lincRNA gene Chr5:136750101-136750565 (+)
FVB/NJ MGP_FVBNJ_G0006576
lincRNA gene Chr5:43327068-43327537 (-)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0006978
lincRNA gene Chr5:141109839-141110303 (+)
PWK/PhJ MGP_PWKPhJ_G0006617
lincRNA gene Chr5:135789825-135790289 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006523
lincRNA gene Chr5:138671987-138672447 (+)
WSB/EiJ MGP_WSBEiJ_G0006729
lincRNA gene Chr5:141804606-141805070 (+)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106338 Ensembl Gene Model | MGI Sequence Detail 465 C57BL/6J ±  kb
transcript ENSMUST00000200129 Ensembl | MGI Sequence Detail 341 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 2
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/19/2024
MGI 6.23
The Jackson Laboratory