Gm43599 Gene Detail

Summary

• Symbol
  Gm43599
• Name
  predicted gene 43599

• Feature Type
  lncRNA gene
• IDs
  MGI:5663736
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:92437911-92450619 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663736	lncRNA gene	Chr5:92437911-92450619 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004114	antisense lncRNA gene	Chr5:93467775-93481924 (+)
A/J	MGP_AJ_G0004095	antisense lncRNA gene	Chr5:89755845-89769139 (+)
AKR/J	MGP_AKRJ_G0004074	antisense lncRNA gene	Chr5:92691533-92704232 (+)
BALB/cJ	MGP_BALBcJ_G0004081	antisense lncRNA gene	Chr5:90639749-90653449 (+)
C3H/HeJ	MGP_C3HHeJ_G0004028	antisense lncRNA gene	Chr5:93097467-93110951 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004229	antisense lncRNA gene	Chr5:97180326-97194028 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003705	antisense lncRNA gene	Chr5:85404656-85417174 (+)
CAST/EiJ	MGP_CASTEiJ_G0003991	antisense lncRNA gene	Chr5:92472892-92488081 (+)
CBA/J	MGP_CBAJ_G0004022	antisense lncRNA gene	Chr5:100550928-100566369 (+)
DBA/2J	MGP_DBA2J_G0004037	antisense lncRNA gene	Chr5:89803745-89816425 (+)
FVB/NJ	MGP_FVBNJ_G0004055	antisense lncRNA gene	Chr5:88648897-88661602 (+)
LP/J	MGP_LPJ_G0004116	antisense lncRNA gene	Chr5:93837663-93850331 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004044	antisense lncRNA gene	Chr5:105460164-105475776 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004225	antisense lncRNA gene	Chr5:92222349-92235752 (+)
PWK/PhJ	MGP_PWKPhJ_G0003944	antisense lncRNA gene	Chr5:88868013-88881464 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003888	antisense lncRNA gene	Chr5:91586406-91599931 (+)
WSB/EiJ	MGP_WSBEiJ_G0004026	antisense lncRNA gene	Chr5:92687749-92701692 (+)

Homology

• Gene Tree
  Gm43599
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106698 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106698	Ensembl Gene Model | MGI Sequence Detail	12709	C57BL/6J
transcript	ENSMUST00000202680	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;