Gm43480 Gene Detail

Summary

• Symbol
  Gm43480
• Name
  predicted gene 43480

• Feature Type
  lncRNA gene
• IDs
  MGI:5663617
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:134327652-134328067 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  41 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663617	lncRNA gene	Chr5:134327652-134328067 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037046	sense intronic lncRNA gene	Chr5:138676863-138677278 (-)
A/J	MGP_AJ_G0037034	sense intronic lncRNA gene	Chr5:132801829-132802244 (-)
AKR/J	MGP_AKRJ_G0036982	sense intronic lncRNA gene	Chr5:137084807-137085222 (-)
BALB/cJ	MGP_BALBcJ_G0037025	sense intronic lncRNA gene	Chr5:134133759-134134174 (-)
C3H/HeJ	MGP_C3HHeJ_G0036712	sense intronic lncRNA gene	Chr5:137634961-137635376 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037538	sense intronic lncRNA gene	Chr5:143901645-143902060 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034586	sense intronic lncRNA gene	Chr5:127076571-127076964 (-)
CAST/EiJ	MGP_CASTEiJ_G0035900	sense intronic lncRNA gene	Chr5:137083060-137083453 (-)
CBA/J	MGP_CBAJ_G0036687	sense intronic lncRNA gene	Chr5:149504690-149505105 (-)
DBA/2J	MGP_DBA2J_G0036862	sense intronic lncRNA gene	Chr5:132703625-132704040 (-)
FVB/NJ	MGP_FVBNJ_G0036812	sense intronic lncRNA gene	Chr5:131833518-131833933 (-)
LP/J	MGP_LPJ_G0036909	sense intronic lncRNA gene	Chr5:139155514-139155929 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036819	sense intronic lncRNA gene	Chr5:152610915-152611330 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037655	sense intronic lncRNA gene	Chr5:136828781-136829196 (-)
PWK/PhJ	MGP_PWKPhJ_G0035592	sense intronic lncRNA gene	Chr5:131720785-131721200 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035401	sense intronic lncRNA gene	Chr5:134393805-134394222 (-)
WSB/EiJ	MGP_WSBEiJ_G0036100	sense intronic lncRNA gene	Chr5:137559546-137559961 (-)

Homology

• Gene Tree
  Gm43480
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107076 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107076	Ensembl Gene Model | MGI Sequence Detail	416	C57BL/6J
transcript	ENSMUST00000201201	Ensembl | MGI Sequence Detail	416	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;