Gm43354 Pseudogene Detail

Summary

• Symbol
  Gm43354
• Name
  predicted gene 43354

• Feature Type
  pseudogene
• IDs
  MGI:5663491
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:127306549-127306894 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  23 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663491	pseudogene	Chr3:127306549-127306894 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012403	pseudogene	Chr3:130001209-130001554 (+)
A/J	MGP_AJ_G0012398	pseudogene	Chr3:125553012-125553368 (+)
AKR/J	MGP_AKRJ_G0012362	pseudogene	Chr3:128798879-128799224 (+)
BALB/cJ	MGP_BALBcJ_G0012381	pseudogene	Chr3:125414943-125415288 (+)
C3H/HeJ	MGP_C3HHeJ_G0012243	pseudogene	Chr3:129179661-129180006 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012695	pseudogene	Chr3:134689010-134689355 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012221	pseudogene	Chr3:139247777-139248122 (+)
DBA/2J	MGP_DBA2J_G0012279	pseudogene	Chr3:124775949-124776294 (+)
FVB/NJ	MGP_FVBNJ_G0012281	pseudogene	Chr3:122340714-122341059 (+)
LP/J	MGP_LPJ_G0012349	pseudogene	Chr3:131551520-131551865 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012285	pseudogene	Chr3:147171003-147171348 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012698	pseudogene	Chr3:128434917-128435262 (+)
PWK/PhJ	MGP_PWKPhJ_G0011851	pseudogene	Chr3:124491930-124492275 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011669	pseudogene	Chr3:126520068-126520413 (+)
WSB/EiJ	MGP_WSBEiJ_G0012039	pseudogene	Chr3:129149753-129150098 (+)

Homology

• Gene Tree
  Gm43354
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm43354
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000104957 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104957	Ensembl Gene Model | MGI Sequence Detail	346	C57BL/6J
transcript	ENSMUST00000196862	Ensembl | MGI Sequence Detail	346	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm43354:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31586	Chr3:127306460-127306466 (+)	-86 bp