Gm43328 Gene Detail

Summary

• Symbol
  Gm43328
• Name
  predicted gene 43328

• Feature Type
  lncRNA gene
• IDs
  MGI:5663465
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:105639760-105641193 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663465	lncRNA gene	Chr3:105639760-105641193 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036996	sense intronic lncRNA gene	Chr3:107109051-107110484 (-)
A/J	MGP_AJ_G0036985	sense intronic lncRNA gene	Chr3:103681820-103683253 (-)
AKR/J	MGP_AKRJ_G0036932	sense intronic lncRNA gene	Chr3:106255780-106257212 (-)
BALB/cJ	MGP_BALBcJ_G0036975	sense intronic lncRNA gene	Chr3:103464842-103466275 (-)
C3H/HeJ	MGP_C3HHeJ_G0036662	sense intronic lncRNA gene	Chr3:106595066-106596499 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037488	sense intronic lncRNA gene	Chr3:111108743-111110176 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034540	sense intronic lncRNA gene	Chr3:99760281-99761659 (-)
CAST/EiJ	MGP_CASTEiJ_G0035850	sense intronic lncRNA gene	Chr3:105747913-105749346 (-)
CBA/J	MGP_CBAJ_G0036637	sense intronic lncRNA gene	Chr3:114848871-114850304 (-)
DBA/2J	MGP_DBA2J_G0036812	sense intronic lncRNA gene	Chr3:102920095-102921527 (-)
FVB/NJ	MGP_FVBNJ_G0036762	sense intronic lncRNA gene	Chr3:100855115-100856548 (-)
LP/J	MGP_LPJ_G0036859	sense intronic lncRNA gene	Chr3:108509832-108511265 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036770	sense intronic lncRNA gene	Chr3:120970223-120971656 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037606	sense intronic lncRNA gene	Chr3:105808346-105809780 (-)
PWK/PhJ	MGP_PWKPhJ_G0035542	sense intronic lncRNA gene	Chr3:102703811-102705246 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035351	sense intronic lncRNA gene	Chr3:103835830-103837229 (-)
WSB/EiJ	MGP_WSBEiJ_G0036050	sense intronic lncRNA gene	Chr3:106364181-106365613 (-)

Homology

• Gene Tree
  Gm43328
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105677 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105677	Ensembl Gene Model | MGI Sequence Detail	1434	C57BL/6J
transcript	ENSMUST00000198544	Ensembl | MGI Sequence Detail	1434	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;