Gm43290 Gene Detail

Summary

• Symbol
  Gm43290
• Name
  predicted gene 43290

• Feature Type
  unclassified gene
• IDs
  MGI:5663427
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:65633848-65635404 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663427	unclassified gene	Chr5:65633848-65635404 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001569	unclassified gene	Chr5:65117314-65118870 (-)
A/J	MGP_AJ_G0001550	unclassified gene	Chr5:62698027-62699578 (-)
AKR/J	MGP_AKRJ_G0001535	unclassified gene	Chr5:64693113-64694668 (-)
BALB/cJ	MGP_BALBcJ_G0001546	unclassified gene	Chr5:63387760-63389311 (-)
C3H/HeJ	MGP_C3HHeJ_G0001523	unclassified gene	Chr5:65032201-65033745 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001664	unclassified gene	Chr5:67797321-67798873 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0001514	unclassified gene	Chr5:69995148-69998559 (-)
DBA/2J	MGP_DBA2J_G0001519	unclassified gene	Chr5:62734556-62736100 (-)
FVB/NJ	MGP_FVBNJ_G0001526	unclassified gene	Chr5:61907200-61908755 (-)
LP/J	MGP_LPJ_G0001573	unclassified gene	Chr5:65625502-65627365 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001509	unclassified gene	Chr5:72877700-72880572 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001652	unclassified gene	Chr5:64360878-64362400 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm43290
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  14

• Ensembl
  ENSMUSG00000104641 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104641	Ensembl Gene Model | MGI Sequence Detail	1557	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43290:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr51116	Chr5:65637214-65637224 (-)	-1,815 bp
Tssr51115	Chr5:65637159-65637187 (-)	-1,769 bp