Gm43258 Gene Detail

Summary

• Symbol
  Gm43258
• Name
  predicted gene 43258

• Feature Type
  lncRNA gene
• IDs
  MGI:5663395
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:104057072-104059021 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663395	lncRNA gene	Chr3:104057072-104059021 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036983	sense intronic lncRNA gene	Chr3:105445702-105447617 (-)
A/J	MGP_AJ_G0036971	sense intronic lncRNA gene	Chr3:102094599-102096508 (-)
AKR/J	MGP_AKRJ_G0036918	sense intronic lncRNA gene	Chr3:104590254-104592163 (-)
BALB/cJ	MGP_BALBcJ_G0036961	sense intronic lncRNA gene	Chr3:101869841-101871765 (-)
C3H/HeJ	MGP_C3HHeJ_G0036648	sense intronic lncRNA gene	Chr3:104968425-104970334 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037474	sense intronic lncRNA gene	Chr3:109364841-109366706 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034527	sense intronic lncRNA gene	Chr3:98226040-98230088 (-)
CAST/EiJ	MGP_CASTEiJ_G0035837	sense intronic lncRNA gene	Chr3:104078710-104080626 (-)
CBA/J	MGP_CBAJ_G0036623	sense intronic lncRNA gene	Chr3:113105208-113107117 (-)
DBA/2J	MGP_DBA2J_G0036798	sense intronic lncRNA gene	Chr3:101342822-101344731 (-)
FVB/NJ	MGP_FVBNJ_G0036748	sense intronic lncRNA gene	Chr3:99274565-99276469 (-)
LP/J	MGP_LPJ_G0036846	sense intronic lncRNA gene	Chr3:106799646-106801561 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036756	sense intronic lncRNA gene	Chr3:119240722-119244363 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037592	sense intronic lncRNA gene	Chr3:104145305-104147237 (-)
PWK/PhJ	MGP_PWKPhJ_G0035529	sense intronic lncRNA gene	Chr3:101123060-101124961 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0036037	sense intronic lncRNA gene	Chr3:104715119-104717035 (-)

Homology

• Gene Tree
  Gm43258
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105846 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105846	Ensembl Gene Model | MGI Sequence Detail	1950	C57BL/6J
transcript	ENSMUST00000200312	Ensembl | MGI Sequence Detail	1950	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;