Gm43240 Gene Detail

Summary

• Symbol
  Gm43240
• Name
  predicted gene 43240

• Feature Type
  lncRNA gene
• IDs
  MGI:5663377
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:144514137-144519299 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663377	lncRNA gene	Chr3:144514137-144519299 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003853	antisense lncRNA gene	Chr3:148138246-148154167 (+)
A/J	MGP_AJ_G0003833	antisense lncRNA gene	Chr3:142919538-142927431 (+)
AKR/J	MGP_AKRJ_G0003810	antisense lncRNA gene	Chr3:146629310-146634437 (+)
BALB/cJ	MGP_BALBcJ_G0003820	antisense lncRNA gene	Chr3:142702286-142724837 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0003963	antisense lncRNA gene	Chr3:153167886-153173058 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003464	antisense lncRNA gene	Chr3:137960908-138011876 (+)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0003775	antisense lncRNA gene	Chr3:142038593-142042638 (+)
FVB/NJ	MGP_FVBNJ_G0003796	antisense lncRNA gene	Chr3:139477539-139482528 (+)
LP/J	MGP_LPJ_G0003855	antisense lncRNA gene	Chr3:149507550-149544071 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003782	antisense lncRNA gene	Chr3:166828919-166864177 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0003687	antisense lncRNA gene	Chr3:141792137-141885678 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003632	antisense lncRNA gene	Chr3:144466817-144492183 (+)
WSB/EiJ	MGP_WSBEiJ_G0003768	antisense lncRNA gene	Chr3:147181250-147208969 (+)

Homology

• Gene Tree
  Gm43240
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16

• Ensembl
  ENSMUSG00000105900 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105900	Ensembl Gene Model | MGI Sequence Detail	5163	C57BL/6J
transcript	ENSMUST00000198543	Ensembl | MGI Sequence Detail	630	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;