Gm43189 Gene Detail

Summary

• Symbol
  Gm43189
• Name
  predicted gene 43189

• Feature Type
  lncRNA gene
• IDs
  MGI:5663326
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:98194304-98197372 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  70 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663326	lncRNA gene	Chr3:98194304-98197372 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036954	sense intronic lncRNA gene	Chr3:99288467-99291525 (+)
A/J	MGP_AJ_G0036942	sense intronic lncRNA gene	Chr3:96102219-96105279 (+)
AKR/J	MGP_AKRJ_G0036889	sense intronic lncRNA gene	Chr3:98402212-98405272 (+)
BALB/cJ	MGP_BALBcJ_G0036933	sense intronic lncRNA gene	Chr3:95899148-95902194 (+)
C3H/HeJ	MGP_C3HHeJ_G0036619	sense intronic lncRNA gene	Chr3:98667035-98670095 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037445	sense intronic lncRNA gene	Chr3:102955406-102958465 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035808	sense intronic lncRNA gene	Chr3:97975715-97978761 (+)
CBA/J	MGP_CBAJ_G0036594	sense intronic lncRNA gene	Chr3:106627688-106632964 (+)
DBA/2J	MGP_DBA2J_G0036769	sense intronic lncRNA gene	Chr3:95405545-95408595 (+)
FVB/NJ	MGP_FVBNJ_G0036719	sense intronic lncRNA gene	Chr3:93400861-93403919 (+)
LP/J	MGP_LPJ_G0036817	sense intronic lncRNA gene	Chr3:100551512-100554570 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036727	sense intronic lncRNA gene	Chr3:112691159-112694244 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037563	sense intronic lncRNA gene	Chr3:98021270-98024320 (+)
PWK/PhJ	MGP_PWKPhJ_G0035501	sense intronic lncRNA gene	Chr3:95304504-95307586 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035313	sense intronic lncRNA gene	Chr3:96301299-96304342 (+)
WSB/EiJ	MGP_WSBEiJ_G0036008	sense intronic lncRNA gene	Chr3:98468133-98471185 (+)

Homology

• Gene Tree
  Gm43189
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000105909 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105909	Ensembl Gene Model | MGI Sequence Detail	3069	C57BL/6J
transcript	ENSMUST00000196040	Ensembl | MGI Sequence Detail	3069	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43189:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30833	Chr3:98194323-98194324 (+)	20 bp