Gm43166 Gene Detail

Summary

• Symbol
  Gm43166
• Name
  predicted gene 43166

• Feature Type
  lncRNA gene
• IDs
  MGI:5663303
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:131158859-131163549 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663303	lncRNA gene	Chr5:131158859-131163549 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037045	sense intronic lncRNA gene	Chr5:135348139-135352827 (-)
A/J	MGP_AJ_G0037033	sense intronic lncRNA gene	Chr5:129598868-129603558 (-)
AKR/J	MGP_AKRJ_G0036981	sense intronic lncRNA gene	Chr5:133806971-133811665 (-)
BALB/cJ	MGP_BALBcJ_G0037024	sense intronic lncRNA gene	Chr5:130953797-130958487 (-)
C3H/HeJ	MGP_C3HHeJ_G0036711	sense intronic lncRNA gene	Chr5:134389166-134393856 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037537	sense intronic lncRNA gene	Chr5:140476807-140481497 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034585	sense intronic lncRNA gene	Chr5:123973077-123977751 (-)
CAST/EiJ	MGP_CASTEiJ_G0035899	sense intronic lncRNA gene	Chr5:133734500-133739153 (-)
CBA/J	MGP_CBAJ_G0036686	sense intronic lncRNA gene	Chr5:146005463-146010153 (-)
DBA/2J	MGP_DBA2J_G0036861	sense intronic lncRNA gene	Chr5:129554838-129559528 (-)
FVB/NJ	MGP_FVBNJ_G0036811	sense intronic lncRNA gene	Chr5:128665568-128670255 (-)
LP/J	MGP_LPJ_G0036908	sense intronic lncRNA gene	Chr5:135866897-135871585 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036818	sense intronic lncRNA gene	Chr5:149255804-149260511 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037654	sense intronic lncRNA gene	Chr5:133546592-133551279 (-)
PWK/PhJ	MGP_PWKPhJ_G0035591	sense intronic lncRNA gene	Chr5:128534062-128538612 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035400	sense intronic lncRNA gene	Chr5:131104289-131108967 (-)
WSB/EiJ	MGP_WSBEiJ_G0036099	sense intronic lncRNA gene	Chr5:134237829-134242518 (-)

Homology

• Gene Tree
  Gm43166
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106710 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106710	Ensembl Gene Model | MGI Sequence Detail	4691	C57BL/6J
transcript	ENSMUST00000202871	Ensembl | MGI Sequence Detail	4379	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;