Gm43113 Gene Detail

Summary

• Symbol
  Gm43113
• Name
  predicted gene 43113

• Feature Type
  lncRNA gene
• IDs
  MGI:5663250
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:4876340-4878093 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  48 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663250	lncRNA gene	Chr5:4876340-4878093 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0037022	sense intronic lncRNA gene	Chr5:1706121-1707856 (-)
A/J	MGP_AJ_G0037010	sense intronic lncRNA gene	Chr5:1621674-1623423 (-)
AKR/J	MGP_AKRJ_G0036958	sense intronic lncRNA gene	Chr5:1635102-1636855 (-)
BALB/cJ	MGP_BALBcJ_G0037001	sense intronic lncRNA gene	Chr5:1814362-1816097 (-)
C3H/HeJ	MGP_C3HHeJ_G0036688	sense intronic lncRNA gene	Chr5:1815514-1817247 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037514	sense intronic lncRNA gene	Chr5:2061338-2063085 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034565	sense intronic lncRNA gene	Chr5:1737134-1738856 (-)
CAST/EiJ	MGP_CASTEiJ_G0035876	sense intronic lncRNA gene	Chr5:1789017-1790741 (-)
CBA/J	MGP_CBAJ_G0036663	sense intronic lncRNA gene	Chr5:2005102-2006833 (-)
DBA/2J	MGP_DBA2J_G0036838	sense intronic lncRNA gene	Chr5:1761483-1763232 (-)
FVB/NJ	MGP_FVBNJ_G0036788	sense intronic lncRNA gene	Chr5:1630821-1633236 (-)
LP/J	MGP_LPJ_G0036885	sense intronic lncRNA gene	Chr5:1791181-1792914 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036795	sense intronic lncRNA gene	Chr5:1874720-1876439 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037631	sense intronic lncRNA gene	Chr5:1713872-1715603 (-)
PWK/PhJ	MGP_PWKPhJ_G0035568	sense intronic lncRNA gene	Chr5:1682066-1683868 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035377	sense intronic lncRNA gene	Chr5:1978582-1980315 (-)
WSB/EiJ	MGP_WSBEiJ_G0036076	sense intronic lncRNA gene	Chr5:1728670-1730401 (-)

Homology

• Gene Tree
  Gm43113
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000105062 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105062	Ensembl Gene Model | MGI Sequence Detail	1754	C57BL/6J
transcript	ENSMUST00000199713	Ensembl | MGI Sequence Detail	1754	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;