Gm43089 Pseudogene Detail

Summary

• Symbol
  Gm43089
• Name
  predicted gene 43089

• Feature Type
  pseudogene
• IDs
  MGI:5663226
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:109370769-109371981 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663226	pseudogene	Chr9:109370769-109371981 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014255	pseudogene	Chr9:111582789-111584001 (-)
A/J	MGP_AJ_G0014271	pseudogene	Chr9:107511956-107513168 (-)
AKR/J	MGP_AKRJ_G0014196	pseudogene	Chr9:110168944-110170156 (-)
BALB/cJ	MGP_BALBcJ_G0014221	pseudogene	Chr9:107211175-107212387 (-)
C3H/HeJ	MGP_C3HHeJ_G0014052	pseudogene	Chr9:110619362-110623054 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0014674	pseudogene	Chr9:114597608-114598820 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0014034	pseudogene	Chr9:118740906-118742127 (-)
DBA/2J	MGP_DBA2J_G0014119	pseudogene	Chr9:106956378-106957590 (-)
FVB/NJ	MGP_FVBNJ_G0014117	pseudogene	Chr9:105796648-105797860 (-)
LP/J	MGP_LPJ_G0014209	pseudogene	Chr9:111826532-111827744 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0014644	pseudogene	Chr9:110491729-110492950 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013767	pseudogene	Chr9:110313846-110315067 (-)

Homology

• Gene Tree
  Gm43089
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000105948 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105948	Ensembl Gene Model | MGI Sequence Detail	1213	C57BL/6J
transcript	ENSMUST00000199162	Ensembl | MGI Sequence Detail	275	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm43089:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91585	Chr9:109372141-109372144 (-)	-162 bp