Gm42917 Gene Detail

Summary

• Symbol
  Gm42917
• Name
  predicted gene 42917

• Feature Type
  lncRNA gene
• IDs
  MGI:5663054
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:121522073-121531528 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663054	lncRNA gene	Chr5:121522073-121531528 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004167	antisense lncRNA gene	Chr5:124859232-124870266 (+)
A/J	MGP_AJ_G0004146	antisense lncRNA gene	Chr5:119724820-119734538 (+)
AKR/J	MGP_AKRJ_G0004127	antisense lncRNA gene	Chr5:123599189-123610320 (+)
BALB/cJ	MGP_BALBcJ_G0004132	antisense lncRNA gene	Chr5:121108330-121118226 (+)
C3H/HeJ	MGP_C3HHeJ_G0004080	antisense lncRNA gene	Chr5:124159873-124170787 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004280	antisense lncRNA gene	Chr5:129621481-129635524 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003757	antisense lncRNA gene	Chr5:114404583-114413895 (+)
CAST/EiJ	MGP_CASTEiJ_G0004042	antisense lncRNA gene	Chr5:123272533-123284375 (+)
CBA/J	MGP_CBAJ_G0004074	antisense lncRNA gene	Chr5:134703867-134726422 (+)
DBA/2J	MGP_DBA2J_G0004090	antisense lncRNA gene	Chr5:119796821-119806466 (+)
FVB/NJ	MGP_FVBNJ_G0004107	antisense lncRNA gene	Chr5:118745540-118754263 (+)
LP/J	MGP_LPJ_G0004168	antisense lncRNA gene	Chr5:125383595-125392871 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004096	antisense lncRNA gene	Chr5:138582596-138593957 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004278	antisense lncRNA gene	Chr5:123107700-123118301 (+)
PWK/PhJ	MGP_PWKPhJ_G0003996	antisense lncRNA gene	Chr5:118564512-118574776 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003939	antisense lncRNA gene	Chr5:120871220-120880435 (+)
WSB/EiJ	MGP_WSBEiJ_G0004079	antisense lncRNA gene	Chr5:123768155-123779338 (+)

Homology

• Gene Tree
  Gm42917
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000104985 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104985	Ensembl Gene Model | MGI Sequence Detail	9456	C57BL/6J
transcript	ENSMUST00000200668	Ensembl | MGI Sequence Detail	928	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9