Gm42899 Gene Detail

Summary

• Symbol
  Gm42899
• Name
  predicted gene 42899

• Feature Type
  unclassified gene
• IDs
  MGI:5663036
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:52990640-52993306 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  83 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5663036	unclassified gene	Chr3:52990640-52993306 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0001153	unclassified gene	Chr3:51663944-51666603 (+)
A/J	MGP_AJ_G0001133	unclassified gene	Chr3:50114751-50117414 (+)
AKR/J	MGP_AKRJ_G0001119	unclassified gene	Chr3:51123491-51126133 (+)
BALB/cJ	MGP_BALBcJ_G0001126	unclassified gene	Chr3:49987309-49989970 (+)
C3H/HeJ	MGP_C3HHeJ_G0001107	unclassified gene	Chr3:51359029-51361693 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0001241	unclassified gene	Chr3:53663367-53666039 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000959	unclassified gene	Chr3:46711559-46714172 (+)
CAST/EiJ	MGP_CASTEiJ_G0001090	unclassified gene	Chr3:51447852-51450479 (+)
CBA/J	MGP_CBAJ_G0001098	unclassified gene	Chr3:55373743-55376401 (+)
DBA/2J	MGP_DBA2J_G0001102	unclassified gene	Chr3:49703157-49705804 (+)
FVB/NJ	MGP_FVBNJ_G0001113	unclassified gene	Chr3:48683520-48686162 (+)
LP/J	MGP_LPJ_G0001161	unclassified gene	Chr3:52403745-52406400 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0001102	unclassified gene	Chr3:59508139-59510805 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0001232	unclassified gene	Chr3:51037013-51039674 (+)
PWK/PhJ	MGP_PWKPhJ_G0001048	unclassified gene	Chr3:49363473-49366145 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0001024	unclassified gene	Chr3:50761353-50763957 (+)
WSB/EiJ	MGP_WSBEiJ_G0001106	unclassified gene	Chr3:51153320-51155984 (+)

Homology

• Gene Tree
  Gm42899
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104687 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104687	Ensembl Gene Model | MGI Sequence Detail	2667	C57BL/6J

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42899:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr29106	Chr3:52991032-52991036 (+)	394 bp