Gm42839 Gene Detail

Summary

• Symbol
  Gm42839
• Name
  predicted gene 42839

• Feature Type
  lncRNA gene
• IDs
  MGI:5662976
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:125163905-125167423 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662976	lncRNA gene	Chr5:125163905-125167423 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004185	antisense lncRNA gene	Chr5:128895173-128898691 (+)
A/J	MGP_AJ_G0004164	antisense lncRNA gene	Chr5:123513958-123517476 (+)
AKR/J	MGP_AKRJ_G0004145	antisense lncRNA gene	Chr5:127501425-127504943 (+)
BALB/cJ	MGP_BALBcJ_G0004150	antisense lncRNA gene	Chr5:124843386-124846904 (+)
C3H/HeJ	MGP_C3HHeJ_G0004098	antisense lncRNA gene	Chr5:128103925-128107443 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004298	antisense lncRNA gene	Chr5:133888616-133892134 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003775	antisense lncRNA gene	Chr5:118049033-118052493 (+)
CAST/EiJ	MGP_CASTEiJ_G0004060	antisense lncRNA gene	Chr5:127251476-127254996 (+)
CBA/J	MGP_CBAJ_G0004092	antisense lncRNA gene	Chr5:139129842-139133360 (+)
DBA/2J	MGP_DBA2J_G0004108	antisense lncRNA gene	Chr5:123531288-123534806 (+)
FVB/NJ	MGP_FVBNJ_G0004124	antisense lncRNA gene	Chr5:122589617-122593135 (+)
LP/J	MGP_LPJ_G0004186	antisense lncRNA gene	Chr5:129414847-129418365 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004114	antisense lncRNA gene	Chr5:142664312-142667830 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004296	antisense lncRNA gene	Chr5:127121285-127124803 (+)
PWK/PhJ	MGP_PWKPhJ_G0004014	antisense lncRNA gene	Chr5:122363852-122367370 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003957	antisense lncRNA gene	Chr5:124755647-124759172 (+)
WSB/EiJ	MGP_WSBEiJ_G0004097	antisense lncRNA gene	Chr5:127815396-127818914 (+)

Homology

• Gene Tree
  Gm42839
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106663 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106663	Ensembl Gene Model | MGI Sequence Detail	3519	C57BL/6J
transcript	ENSMUST00000198978	Ensembl | MGI Sequence Detail	525	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;