Gm42821 Pseudogene Detail

Summary

• Symbol
  Gm42821
• Name
  predicted gene 42821

• Feature Type
  pseudogene
• IDs
  MGI:5662958
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:98155915-98156403 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  36 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662958	pseudogene	Chr3:98155915-98156403 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012304	pseudogene	Chr3:99248490-99248977 (+)
A/J	MGP_AJ_G0012298	pseudogene	Chr3:96058655-96059143 (+)
AKR/J	MGP_AKRJ_G0012264	pseudogene	Chr3:98361880-98362368 (+)
BALB/cJ	MGP_BALBcJ_G0012281	pseudogene	Chr3:95861530-95862018 (+)
C3H/HeJ	MGP_C3HHeJ_G0012146	pseudogene	Chr3:98627117-98627605 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012593	pseudogene	Chr3:102916934-102917422 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0011918	pseudogene	Chr3:97934982-97935470 (+)
CBA/J	MGP_CBAJ_G0012125	pseudogene	Chr3:106584371-106584859 (+)
DBA/2J	MGP_DBA2J_G0012180	pseudogene	Chr3:95367956-95368444 (+)
FVB/NJ	MGP_FVBNJ_G0012183	pseudogene	Chr3:93362867-93363354 (+)
LP/J	MGP_LPJ_G0012250	pseudogene	Chr3:100511370-100511857 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012187	pseudogene	Chr3:112651820-112652308 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012598	pseudogene	Chr3:97981190-97981677 (+)
PWK/PhJ	MGP_PWKPhJ_G0011763	pseudogene	Chr3:95264094-95264582 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011577	pseudogene	Chr3:96259773-96260261 (+)
WSB/EiJ	MGP_WSBEiJ_G0011948	pseudogene	Chr3:98423091-98423578 (+)

Homology

• Gene Tree
  Gm42821
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm42821
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000104842 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104842	Ensembl Gene Model | MGI Sequence Detail	489	C57BL/6J
transcript	ENSMUST00000199771	Ensembl | MGI Sequence Detail	489	Not Applicable

References

• Summaries
  All 6

  Diseases 1

  Phenotypes 4
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426