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Gm42818 Pseudogene Detail
Summary
  • Symbol
    Gm42818
  • Name
    predicted gene 42818
  • Feature Type
    pseudogene
  • IDs
    MGI:5662955
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr6:70129652-70130638 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    8 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5662955
pseudogene Chr6:70129652-70130638 (+)
129S1/SvImJ MGP_129S1SvImJ_G0013536
pseudogene Chr6:70492622-70493511 (+)
A/J MGP_AJ_G0013522
pseudogene Chr6:67693060-67694853 (+)
AKR/J MGP_AKRJ_G0014876
pseudogene ChrX:157132733-157133861 (+)
BALB/cJ MGP_BALBcJ_G0013502
pseudogene Chr6:67851033-67852019 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0012946
pseudogene Chr4:51581209-51582771 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0012377
pseudogene Chr9:20707409-20708351 (-)
CAST/EiJ MGP_CASTEiJ_G0014335
pseudogene ChrX:132505148-132506154 (+)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0013471
pseudogene Chr6:70309784-70310769 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0012949
pseudogene Chr4:49426974-49427960 (-)
PWK/PhJ MGP_PWKPhJ_G0012854
pseudogene Chr6:66150219-66151320 (+)
SPRET/EiJ MGP_SPRETEiJ_G0013182
pseudogene Chr9:22194945-22195943 (-)
WSB/EiJ MGP_WSBEiJ_G0013640
pseudogene Chr9:21876954-21877953 (-)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106192 Ensembl Gene Model | MGI Sequence Detail 987 C57BL/6J ±  kb
transcript ENSMUST00000198869 Ensembl | MGI Sequence Detail 987 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 2
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory