Gm42808 Gene Detail

Summary

• Symbol
  Gm42808
• Name
  predicted gene 42808

• Feature Type
  lncRNA gene
• IDs
  MGI:5662945
  NCBI Gene: 108169080
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:140531241-140532147 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662945	lncRNA gene	Chr5:140523116-140535496 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006844	lincRNA gene	Chr5:145636797-145637703 (-)
A/J	MGP_AJ_G0006838	lincRNA gene	Chr5:139425875-139426781 (-)
AKR/J	MGP_AKRJ_G0006808	lincRNA gene	Chr5:143786643-143787549 (-)
BALB/cJ	MGP_BALBcJ_G0006814	lincRNA gene	Chr5:140670129-140671035 (-)
C3H/HeJ	MGP_C3HHeJ_G0006759	lincRNA gene	Chr5:144574015-144574921 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006978	lincRNA gene	Chr5:151030196-151031102 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006230	lincRNA gene	Chr5:133266339-133267249 (-)
CAST/EiJ	MGP_CASTEiJ_G0007126	lincRNA gene	Chr8:19221416-19222317 (+)
CBA/J	MGP_CBAJ_G0006741	lincRNA gene	Chr5:157234893-157235799 (-)
DBA/2J	MGP_DBA2J_G0006761	lincRNA gene	Chr5:139238285-139239191 (-)
FVB/NJ	MGP_FVBNJ_G0006784	lincRNA gene	Chr5:138389883-138390789 (-)
LP/J	MGP_LPJ_G0006844	lincRNA gene	Chr5:146247455-146248361 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006766	lincRNA gene	Chr5:159824002-159824908 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006981	lincRNA gene	Chr5:143625539-143626445 (-)
PWK/PhJ	MGP_PWKPhJ_G0006620	lincRNA gene	Chr5:138264792-138265699 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006527	lincRNA gene	Chr5:141327983-141328888 (-)
WSB/EiJ	MGP_WSBEiJ_G0006732	lincRNA gene	Chr5:144399144-144400050 (-)

Homology

• Gene Tree
  Gm42808
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  3

• Ensembl
  ENSMUSG00000105845 (Evidence)
• NCBI Gene
  108169080

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105845	Ensembl Gene Model | MGI Sequence Detail	907	C57BL/6J
transcript	ENSMUST00000198212	Ensembl | MGI Sequence Detail	285	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;