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Gm42800 Gene Detail
Summary
  • Symbol
    Gm42800
  • Name
    predicted gene 42800
  • Feature Type
    lncRNA gene
  • IDs
    MGI:5662937
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr5:75548436-75560033 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    154 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5662937
 lncRNA gene Chr5:75548436-75560033 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006672
 lincRNA gene Chr5:75518219-75530825 (-)
A/J MGP_AJ_G0006666
 lincRNA gene Chr5:72648562-72660057 (-)
AKR/J MGP_AKRJ_G0006636
 lincRNA gene Chr5:75011098-75022639 (-)
BALB/cJ MGP_BALBcJ_G0006641
 lincRNA gene Chr5:73354941-73366464 (-)
C3H/HeJ MGP_C3HHeJ_G0006587
 lincRNA gene Chr5:75401990-75413791 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006806
 lincRNA gene Chr5:78565081-78577725 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006065
 lincRNA gene Chr5:68314319-68326306 (-)
CAST/EiJ MGP_CASTEiJ_G0006510
 lincRNA gene Chr5:74519490-74531100 (-)
CBA/J MGP_CBAJ_G0006568
 lincRNA gene Chr5:81137154-81154218 (-)
DBA/2J MGP_DBA2J_G0006588
 lincRNA gene Chr5:72725015-72736557 (-)
FVB/NJ MGP_FVBNJ_G0006613
 lincRNA gene Chr5:71881358-71893209 (-)
LP/J MGP_LPJ_G0006673
 lincRNA gene Chr5:75952707-75967156 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006597
 lincRNA gene Chr5:84352736-84364589 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006808
 lincRNA gene Chr5:74556741-74569345 (-)
PWK/PhJ MGP_PWKPhJ_G0006449
 lincRNA gene Chr5:71721711-71733722 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006356
 lincRNA gene Chr5:73907005-73918584 (-)
WSB/EiJ MGP_WSBEiJ_G0006561
 lincRNA gene Chr5:74843344-74854837 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000107386 Ensembl Gene Model | MGI Sequence Detail 11598 C57BL/6J ±  kb
transcript ENSMUST00000202494 Ensembl | MGI Sequence Detail 733 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 6
    Phenotypes 4
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory