Gm42743 Gene Detail

Summary

• Symbol
  Gm42743
• Name
  predicted gene 42743

• Feature Type
  lncRNA gene
• IDs
  MGI:5662880
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:96177037-96186317 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  77 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662880	lncRNA gene	Chr3:96177037-96186317 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006245	lincRNA gene	Chr3:97082497-97088574 (+)
A/J	MGP_AJ_G0006238	lincRNA gene	Chr3:94035257-94041334 (+)
AKR/J	MGP_AKRJ_G0006213	lincRNA gene	Chr3:96242285-96248640 (+)
BALB/cJ	MGP_BALBcJ_G0006213	lincRNA gene	Chr3:93823919-93830014 (+)
C3H/HeJ	MGP_C3HHeJ_G0006163	lincRNA gene	Chr3:96523708-96529780 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006377	lincRNA gene	Chr3:100643401-100649678 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005680	lincRNA gene	Chr3:90355284-90363088 (+)
CAST/EiJ	MGP_CASTEiJ_G0006097	lincRNA gene	Chr3:95838062-95844134 (+)
CBA/J	MGP_CBAJ_G0006148	lincRNA gene	Chr3:104328257-104334343 (+)
DBA/2J	MGP_DBA2J_G0006168	lincRNA gene	Chr3:93336583-93344181 (+)
FVB/NJ	MGP_FVBNJ_G0006190	lincRNA gene	Chr3:91396663-91402735 (+)
LP/J	MGP_LPJ_G0006249	lincRNA gene	Chr3:98407268-98413395 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006181	lincRNA gene	Chr3:110419004-110425036 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006382	lincRNA gene	Chr3:95872893-95878990 (+)
PWK/PhJ	MGP_PWKPhJ_G0006041	lincRNA gene	Chr3:93235372-93241641 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005949	lincRNA gene	Chr3:94173937-94182836 (+)
WSB/EiJ	MGP_WSBEiJ_G0006144	lincRNA gene	Chr3:96268265-96274342 (+)

Homology

• Gene Tree
  Gm42743
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm42743
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000050936 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000050936	Ensembl Gene Model | MGI Sequence Detail	9281	C57BL/6J
transcript	ENSMUST00000051089	Ensembl | MGI Sequence Detail	1511	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42743:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30711	Chr3:96177011-96177019 (+)	-22 bp
Tssr30712	Chr3:96182343-96182348 (+)	5,309 bp