Gm42726 Gene Detail

Summary

• Symbol
  Gm42726
• Name
  predicted gene 42726

• Feature Type
  lncRNA gene
• IDs
  MGI:5662863
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:65745059-65748783 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662863	lncRNA gene	Chr5:65745059-65748783 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004086	antisense lncRNA gene	Chr5:65244908-65250639 (-)
A/J	MGP_AJ_G0004067	antisense lncRNA gene	Chr5:62813965-62817655 (-)
AKR/J	MGP_AKRJ_G0004045	antisense lncRNA gene	Chr5:64810874-64814941 (-)
BALB/cJ	MGP_BALBcJ_G0004053	antisense lncRNA gene	Chr5:63502143-63505847 (-)
C3H/HeJ	MGP_C3HHeJ_G0003999	antisense lncRNA gene	Chr5:65149990-65153669 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004201	antisense lncRNA gene	Chr5:67932551-67938553 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003678	antisense lncRNA gene	Chr5:58889220-58892603 (-)
CAST/EiJ	MGP_CASTEiJ_G0003962	antisense lncRNA gene	Chr5:64251169-64255577 (-)
CBA/J	MGP_CBAJ_G0003993	antisense lncRNA gene	Chr5:70137670-70144503 (-)
DBA/2J	MGP_DBA2J_G0004008	antisense lncRNA gene	Chr5:62850625-62854377 (-)
FVB/NJ	MGP_FVBNJ_G0004027	antisense lncRNA gene	Chr5:62021216-62024910 (-)
LP/J	MGP_LPJ_G0004088	antisense lncRNA gene	Chr5:65750055-65753764 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004016	antisense lncRNA gene	Chr5:73011151-73014826 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004197	antisense lncRNA gene	Chr5:64482118-64487233 (-)
PWK/PhJ	MGP_PWKPhJ_G0003915	antisense lncRNA gene	Chr5:61825932-61829963 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003860	antisense lncRNA gene	Chr5:63809923-63822375 (-)
WSB/EiJ	MGP_WSBEiJ_G0003997	antisense lncRNA gene	Chr5:64689341-64695000 (-)

Homology

• Gene Tree
  Gm42726
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000107102 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107102	Ensembl Gene Model | MGI Sequence Detail	3725	C57BL/6J
transcript	ENSMUST00000202274	Ensembl | MGI Sequence Detail	1286	Not Applicable

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;