Gm42723 Gene Detail

Summary

• Symbol
  Gm42723
• Name
  predicted gene 42723

• Feature Type
  lncRNA gene
• IDs
  MGI:5662860
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr19:38288531-38303718 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, Syntenic

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662860	lncRNA gene	Chr19:38288531-38303718 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003478	antisense lncRNA gene	Chr19:37342993-37359710 (-)
A/J	MGP_AJ_G0003458	antisense lncRNA gene	Chr19:35524000-35538078 (-)
AKR/J	MGP_AKRJ_G0003437	antisense lncRNA gene	Chr19:36725123-36742351 (-)
BALB/cJ	MGP_BALBcJ_G0003447	antisense lncRNA gene	Chr19:35632765-35649646 (-)
C3H/HeJ	MGP_C3HHeJ_G0003395	antisense lncRNA gene	Chr19:36807747-36825165 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003585	antisense lncRNA gene	Chr19:38403410-38420678 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003095	antisense lncRNA gene	Chr19:34883792-34899413 (-)
CAST/EiJ	MGP_CASTEiJ_G0003358	antisense lncRNA gene	Chr19:36677692-36698669 (-)
CBA/J	MGP_CBAJ_G0003392	antisense lncRNA gene	Chr19:40199299-40216755 (-)
DBA/2J	MGP_DBA2J_G0003400	antisense lncRNA gene	Chr19:35378756-35394865 (-)
FVB/NJ	MGP_FVBNJ_G0003419	antisense lncRNA gene	Chr19:35198742-35214747 (-)
LP/J	MGP_LPJ_G0003473	antisense lncRNA gene	Chr19:37434938-37451869 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003407	antisense lncRNA gene	Chr19:39978028-39995307 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003588	antisense lncRNA gene	Chr19:36829854-36848558 (-)
PWK/PhJ	MGP_PWKPhJ_G0003314	antisense lncRNA gene	Chr19:35261370-35262428 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003259	antisense lncRNA gene	Chr19:35666416-35684308 (-)
WSB/EiJ	MGP_WSBEiJ_G0003393	antisense lncRNA gene	Chr19:36923506-36942013 (-)

Homology

• Gene Tree
  Gm42723
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000105709 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105709	Ensembl Gene Model | MGI Sequence Detail	15188	C57BL/6J
transcript	ENSMUST00000200561	Ensembl | MGI Sequence Detail	1254	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;