Gm42722 Gene Detail

Summary

• Symbol
  Gm42722
• Name
  predicted gene 42722

• Feature Type
  lncRNA gene
• IDs
  MGI:5662859
  NCBI Gene: 115489728
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:105924549-105931452 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  56 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662859	lncRNA gene	Chr3:105908877-105931452 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003811	antisense lncRNA gene	Chr3:107390439-107409091 (+)
A/J	MGP_AJ_G0003791	antisense lncRNA gene	Chr3:103957056-103974192 (+)
AKR/J	MGP_AKRJ_G0003767	antisense lncRNA gene	Chr3:106536577-106551949 (+)
BALB/cJ	MGP_BALBcJ_G0003778	antisense lncRNA gene	Chr3:103740062-103757984 (+)
C3H/HeJ	MGP_C3HHeJ_G0003725	antisense lncRNA gene	Chr3:106882737-106899123 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003920	antisense lncRNA gene	Chr3:111396556-111414432 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003423	antisense lncRNA gene	Chr3:100031409-100050015 (+)
CAST/EiJ	MGP_CASTEiJ_G0003689	antisense lncRNA gene	Chr3:106036213-106055865 (+)
CBA/J	no annotation
DBA/2J	MGP_DBA2J_G0003731	antisense lncRNA gene	Chr3:103201257-103218182 (+)
FVB/NJ	MGP_FVBNJ_G0003752	antisense lncRNA gene	Chr3:101125398-101141293 (+)
LP/J	MGP_LPJ_G0003813	antisense lncRNA gene	Chr3:108793712-108810584 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003739	antisense lncRNA gene	Chr3:121270680-121283312 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003921	antisense lncRNA gene	Chr3:106108633-106130552 (+)
PWK/PhJ	MGP_PWKPhJ_G0003645	antisense lncRNA gene	Chr3:102983697-103001675 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003589	antisense lncRNA gene	Chr3:104113654-104133216 (+)
WSB/EiJ	MGP_WSBEiJ_G0003725	antisense lncRNA gene	Chr3:106645354-106665204 (+)

Homology

• Gene Tree
  Gm42722
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000106093 (Evidence)
• NCBI Gene
  115489728

Representative Sequences			Length	Strain/Species
genomic	115489728	NCBI Gene Model | MGI Sequence Detail	6904	C57BL/6J
transcript	XR_004941628	RefSeq | MGI Sequence Detail	995	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;