Gm42720 Pseudogene Detail

Summary

• Symbol
  Gm42720
• Name
  predicted gene 42720

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5662857
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:70470348-70470647 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  79 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662857	pseudogenic gene segment	Chr6:70470348-70470647 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000288	pseudogenic gene segment	Chr6:70895300-70895599 (-)
A/J	MGP_AJ_G0000261	pseudogenic gene segment	Chr6:68147939-68148238 (-)
AKR/J	MGP_AKRJ_G0000260	pseudogenic gene segment	Chr6:70108945-70109245 (-)
BALB/cJ	MGP_BALBcJ_G0000256	pseudogenic gene segment	Chr6:68215270-68215569 (-)
C3H/HeJ	MGP_C3HHeJ_G0000210	pseudogenic gene segment	Chr6:114134830-114135129 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000378	pseudogenic gene segment	Chr6:72711266-72711565 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0000248	pseudogenic gene segment	Chr6:70057603-70057903 (-)
CBA/J	MGP_CBAJ_G0000247	pseudogenic gene segment	Chr6:75568316-75568615 (-)
DBA/2J	MGP_DBA2J_G0000245	pseudogenic gene segment	Chr6:67557643-67557942 (-)
FVB/NJ	MGP_FVBNJ_G0000250	pseudogenic gene segment	Chr6:66932207-66932506 (-)
LP/J	MGP_LPJ_G0000299	pseudogenic gene segment	Chr6:70755562-70755861 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000258	pseudogenic gene segment	Chr6:79203498-79203798 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000355	pseudogenic gene segment	Chr6:69957139-69957438 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0000250	pseudogenic gene segment	Chr6:70285408-70285707 (-)

Homology

• Gene Tree
  Gm42720
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17

• Ensembl
  ENSMUSG00000106315 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106315	Ensembl Gene Model | MGI Sequence Detail	300	C57BL/6J
transcript	ENSMUST00000196813	Ensembl | MGI Sequence Detail	300	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;