Gm42717 Gene Detail

Summary

• Symbol
  Gm42717
• Name
  predicted gene 42717

• Feature Type
  lncRNA gene
• IDs
  MGI:5662854
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:99113738-99117200 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic

Strain
Comparison

• SNPs within 2kb
  26 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662854	lncRNA gene	Chr3:99113738-99117200 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0036956	sense intronic lncRNA gene	Chr3:100275716-100279171 (+)
A/J	MGP_AJ_G0036944	sense intronic lncRNA gene	Chr3:97075972-97079440 (+)
AKR/J	MGP_AKRJ_G0036891	sense intronic lncRNA gene	Chr3:99424260-99427722 (+)
BALB/cJ	MGP_BALBcJ_G0036935	sense intronic lncRNA gene	Chr3:96884599-96888063 (+)
C3H/HeJ	MGP_C3HHeJ_G0036621	sense intronic lncRNA gene	Chr3:99766565-99770031 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037447	sense intronic lncRNA gene	Chr3:103964571-103968033 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034503	sense intronic lncRNA gene	Chr3:93369834-93373223 (+)
CAST/EiJ	MGP_CASTEiJ_G0035810	sense intronic lncRNA gene	Chr3:98897527-98900967 (+)
CBA/J	MGP_CBAJ_G0036596	sense intronic lncRNA gene	Chr3:107667089-107670555 (+)
DBA/2J	MGP_DBA2J_G0036771	sense intronic lncRNA gene	Chr3:96360725-96364079 (+)
FVB/NJ	MGP_FVBNJ_G0036721	sense intronic lncRNA gene	Chr3:94304096-94307551 (+)
LP/J	MGP_LPJ_G0036819	sense intronic lncRNA gene	Chr3:101643217-101646672 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036729	sense intronic lncRNA gene	Chr3:113772504-113775962 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037565	sense intronic lncRNA gene	Chr3:98979384-98982840 (+)
PWK/PhJ	MGP_PWKPhJ_G0035503	sense intronic lncRNA gene	Chr3:96130536-96133976 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035315	sense intronic lncRNA gene	Chr3:97069420-97074145 (+)
WSB/EiJ	MGP_WSBEiJ_G0036010	sense intronic lncRNA gene	Chr3:99528155-99531615 (+)

Homology

• Gene Tree
  Gm42717
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106197 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106197	Ensembl Gene Model | MGI Sequence Detail	3463	C57BL/6J
transcript	ENSMUST00000197309	Ensembl | MGI Sequence Detail	3463	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;