Gm42686 Gene Detail

Summary

• Symbol
  Gm42686
• Name
  predicted gene 42686

• Feature Type
  unclassified gene
• IDs
  MGI:5662823
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:8781661-8785768 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662823	unclassified gene	Chr5:8781661-8785768 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0001383	unclassified gene	Chr5:5712262-5718778 (-)
A/J	no annotation
AKR/J	MGP_AKRJ_G0001349	unclassified gene	Chr5:5657470-5663165 (-)
BALB/cJ	MGP_BALBcJ_G0001359	unclassified gene	Chr5:5739901-5744858 (-)
C3H/HeJ	MGP_C3HHeJ_G0001336	unclassified gene	Chr5:5879571-5885233 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0001475	unclassified gene	Chr5:6228803-6232612 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0001317	unclassified gene	Chr5:5703471-5708558 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0001389	unclassified gene	Chr5:5828277-5839273 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0001465	unclassified gene	Chr5:5648719-5653666 (-)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0001245	unclassified gene	Chr5:5829456-5833971 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm42686
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000104535 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104535	Ensembl Gene Model | MGI Sequence Detail	4108	C57BL/6J

References

• Summaries
  All 3

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;