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Gm42643 Pseudogene Detail
Summary
  • Symbol
    Gm42643
  • Name
    predicted gene 42643
  • Feature Type
    pseudogenic gene segment
  • IDs
    MGI:5662780
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr12:115881779-115882057 bp, - strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 12, Syntenic
Strain
Comparison
more
  • SNPs within 2kb
    78 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5662780
pseudogenic gene segment Chr12:115881779-115882057 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000233
pseudogenic gene segment Chr12:118727636-118727900 (-)
A/J MGP_AJ_G0000210
pseudogenic gene segment Chr12:114375072-114375327 (-)
AKR/J MGP_AKRJ_G0000210
pseudogenic gene segment Chr12:117826263-117826541 (-)
BALB/cJ MGP_BALBcJ_G0000205
pseudogenic gene segment Chr12:114806888-114807166 (-)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0000309
pseudogenic gene segment Chr12:122458586-122458864 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0000247
pseudogenic gene segment Chr12:118740727-118741005 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0000213
pseudogenic gene segment Chr12:130617677-130617955 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0000295
pseudogenic gene segment Chr12:116986816-116987094 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000106645 Ensembl Gene Model | MGI Sequence Detail 279 C57BL/6J ±  kb
transcript ENSMUST00000200504 Ensembl | MGI Sequence Detail 279 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 2
  • Earliest
    J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
04/13/2021
MGI 6.16
The Jackson Laboratory