Gm42539 Pseudogene Detail

Summary

• Symbol
  Gm42539
• Name
  predicted gene 42539

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:5662676
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:68852412-68852807 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  52 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662676	pseudogenic gene segment	Chr6:68852412-68852807 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0000264	pseudogenic gene segment	Chr6:69129418-69129813 (-)
A/J	MGP_AJ_G0000238	pseudogenic gene segment	Chr6:66200818-66201213 (-)
AKR/J	MGP_AKRJ_G0000239	pseudogenic gene segment	Chr6:68072709-68073102 (-)
BALB/cJ	MGP_BALBcJ_G0000235	pseudogenic gene segment	Chr6:66503830-66504225 (-)
C3H/HeJ	MGP_C3HHeJ_G0000232	pseudogenic gene segment	Chr6:115997856-115998251 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0000339	pseudogenic gene segment	Chr6:70809922-70810317 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000115	pseudogenic gene segment	Chr6:65697939-65698261 (-)
CAST/EiJ	MGP_CASTEiJ_G0000230	pseudogenic gene segment	Chr6:68457906-68458299 (-)
CBA/J	MGP_CBAJ_G0000226	pseudogenic gene segment	Chr6:73583275-73583670 (-)
DBA/2J	MGP_DBA2J_G0000223	pseudogenic gene segment	Chr6:65797173-65797568 (-)
FVB/NJ	MGP_FVBNJ_G0000227	pseudogenic gene segment	Chr6:65242222-65242617 (-)
LP/J	MGP_LPJ_G0000275	pseudogenic gene segment	Chr6:68938519-68938914 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0000239	pseudogenic gene segment	Chr6:77335662-77336055 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0000325	pseudogenic gene segment	Chr6:68247810-68248205 (-)
PWK/PhJ	MGP_PWKPhJ_G0000196	pseudogenic gene segment	Chr6:64771085-64771480 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0000176	pseudogenic gene segment	Chr6:67536631-67537029 (-)
WSB/EiJ	MGP_WSBEiJ_G0000234	pseudogenic gene segment	Chr6:68513779-68514177 (-)

Homology

• Gene Tree
  Gm42539
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106124 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106124	Ensembl Gene Model | MGI Sequence Detail	396	C57BL/6J
transcript	ENSMUST00000197009	Ensembl | MGI Sequence Detail	308	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;