Gm42529 Gene Detail

Summary

• Symbol
  Gm42529
• Name
  predicted gene 42529

• Feature Type
  lncRNA gene
• IDs
  MGI:5662666
  NCBI Gene: 108169086
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:150483674-150489891 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  63 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662666	lncRNA gene	Chr5:150481894-150490355 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004228	antisense lncRNA gene	Chr5:156502795-156508953 (-)
A/J	MGP_AJ_G0004206	antisense lncRNA gene	Chr5:149794359-149800584 (-)
AKR/J	MGP_AKRJ_G0004187	antisense lncRNA gene	Chr5:154419162-154425369 (-)
BALB/cJ	MGP_BALBcJ_G0004193	antisense lncRNA gene	Chr5:151056255-151062523 (-)
C3H/HeJ	MGP_C3HHeJ_G0004141	antisense lncRNA gene	Chr5:155422430-155428647 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004342	antisense lncRNA gene	Chr5:162214254-162220386 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003815	antisense lncRNA gene	Chr5:144121498-144127990 (-)
CAST/EiJ	MGP_CASTEiJ_G0004103	antisense lncRNA gene	Chr5:155072627-155079124 (-)
CBA/J	MGP_CBAJ_G0004135	antisense lncRNA gene	Chr5:169052744-169058946 (-)
DBA/2J	MGP_DBA2J_G0004151	antisense lncRNA gene	Chr5:149445432-149451661 (-)
FVB/NJ	MGP_FVBNJ_G0004167	antisense lncRNA gene	Chr5:148689808-148696458 (-)
LP/J	MGP_LPJ_G0004229	antisense lncRNA gene	Chr5:157162551-157169795 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004157	antisense lncRNA gene	Chr5:171102533-171108748 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004339	antisense lncRNA gene	Chr5:154377263-154383519 (-)
PWK/PhJ	MGP_PWKPhJ_G0004056	antisense lncRNA gene	Chr5:148612012-148618457 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004000	antisense lncRNA gene	Chr5:151662658-151668873 (-)
WSB/EiJ	MGP_WSBEiJ_G0004139	antisense lncRNA gene	Chr5:155188386-155195474 (-)

Homology

• Gene Tree
  Gm42529
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000106764 (Evidence)
• NCBI Gene
  108169086

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106764	Ensembl Gene Model | MGI Sequence Detail	6218	C57BL/6J
transcript	ENSMUST00000201843	Ensembl | MGI Sequence Detail	741	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm42529:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54663	Chr5:150489885-150489890 (-)	3 bp