Gm42524 Gene Detail

Summary

• Symbol
  Gm42524
• Name
  predicted gene 42524

• Feature Type
  lncRNA gene
• IDs
  MGI:5662661
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:39615440-39635022 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662661	lncRNA gene	Chr5:39615440-39635022 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006621	lincRNA gene	Chr5:37915719-37937570 (+)
A/J	MGP_AJ_G0006615	lincRNA gene	Chr5:36652574-36671668 (+)
AKR/J	MGP_AKRJ_G0006585	lincRNA gene	Chr5:37990844-38010380 (+)
BALB/cJ	MGP_BALBcJ_G0006590	lincRNA gene	Chr5:37107983-37128823 (+)
C3H/HeJ	MGP_C3HHeJ_G0006537	lincRNA gene	Chr5:37997921-38017639 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006755	lincRNA gene	Chr5:39885430-39907848 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006021	lincRNA gene	Chr5:34269732-34289113 (+)
CAST/EiJ	MGP_CASTEiJ_G0006461	lincRNA gene	Chr5:37179161-37197913 (+)
CBA/J	MGP_CBAJ_G0006518	lincRNA gene	Chr5:40816688-40842779 (+)
DBA/2J	MGP_DBA2J_G0006540	lincRNA gene	Chr5:36751139-36770530 (+)
FVB/NJ	MGP_FVBNJ_G0006561	lincRNA gene	Chr5:36233980-36254782 (+)
LP/J	MGP_LPJ_G0006622	lincRNA gene	Chr5:38369906-38394165 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006547	lincRNA gene	Chr5:41558300-41584072 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006759	lincRNA gene	Chr5:37513349-37534759 (+)
PWK/PhJ	MGP_PWKPhJ_G0006399	lincRNA gene	Chr5:35938137-35956772 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006309	lincRNA gene	Chr5:36976923-36997734 (+)
WSB/EiJ	MGP_WSBEiJ_G0006512	lincRNA gene	Chr5:37597892-37616168 (+)

Homology

• Gene Tree
  Gm42524
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Spontaneous
  1
• Genomic Mutations
  3 involving Gm42524
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000106679 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106679	Ensembl Gene Model | MGI Sequence Detail	19583	C57BL/6J
transcript	ENSMUST00000202881	Ensembl | MGI Sequence Detail	2214	Not Applicable

References

• Summaries
  All 6

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17