Gm42458 Gene Detail

Summary

• Symbol
  Gm42458
• Name
  predicted gene 42458

• Feature Type
  lncRNA gene
• IDs
  MGI:5662595
  NCBI Gene: 118567452
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:127302452-127302820 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  21 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662595	lncRNA gene	Chr6:127302452-127307252 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002077	unclassified gene	Chr6:130821562-130821931 (-)
A/J	MGP_AJ_G0002053	unclassified gene	Chr6:125849178-125849547 (-)
AKR/J	MGP_AKRJ_G0002039	unclassified gene	Chr6:129247839-129248208 (-)
BALB/cJ	MGP_BALBcJ_G0002050	unclassified gene	Chr6:125403970-125404339 (-)
C3H/HeJ	MGP_C3HHeJ_G0002025	unclassified gene	Chr6:129374409-129374778 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002172	unclassified gene	Chr6:134233170-134233538 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0001801	unclassified gene	Chr6:123023477-123023844 (-)
CAST/EiJ	MGP_CASTEiJ_G0001992	unclassified gene	Chr6:129579812-129580181 (-)
CBA/J	MGP_CBAJ_G0002020	unclassified gene	Chr6:139396412-139396781 (-)
DBA/2J	MGP_DBA2J_G0002024	unclassified gene	Chr6:124734347-124734716 (-)
FVB/NJ	MGP_FVBNJ_G0002032	unclassified gene	Chr6:123662494-123662863 (-)
LP/J	MGP_LPJ_G0002079	unclassified gene	Chr6:130929272-130929641 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002009	unclassified gene	Chr6:143340386-143340755 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002162	unclassified gene	Chr6:129209923-129210292 (-)
PWK/PhJ	MGP_PWKPhJ_G0001954	unclassified gene	Chr6:123012080-123012448 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0001915	unclassified gene	Chr6:127295832-127296222 (-)
WSB/EiJ	MGP_WSBEiJ_G0002018	unclassified gene	Chr6:129572867-129573236 (-)

Homology

• Gene Tree
  Gm42458
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000106843 (Evidence)
• NCBI Gene
  118567452

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000106843	Ensembl Gene Model | MGI Sequence Detail	369	C57BL/6J
transcript	XR_004933844	RefSeq | MGI Sequence Detail	4109	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;