Gm42456 Gene Detail

Summary

• Symbol
  Gm42456
• Name
  predicted gene 42456

• Feature Type
  lncRNA gene
• IDs
  MGI:5662593
  NCBI Gene: 115490145
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:137276848-137286924 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5662593	lncRNA gene	Chr5:137272355-137286924 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0006836	lincRNA gene	Chr5:142004564-142020284 (-)
A/J	MGP_AJ_G0006830	lincRNA gene	Chr5:135822552-135840529 (-)
AKR/J	MGP_AKRJ_G0006800	lincRNA gene	Chr5:140224423-140242787 (-)
BALB/cJ	MGP_BALBcJ_G0006806	lincRNA gene	Chr5:137195545-137210254 (-)
C3H/HeJ	MGP_C3HHeJ_G0006751	lincRNA gene	Chr5:140881413-140897076 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0006970	lincRNA gene	Chr5:147260719-147277957 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006223	lincRNA gene	Chr5:130079144-130094053 (-)
CAST/EiJ	MGP_CASTEiJ_G0006673	lincRNA gene	Chr5:140282916-140298319 (-)
CBA/J	MGP_CBAJ_G0006733	lincRNA gene	Chr5:153102125-153123180 (-)
DBA/2J	MGP_DBA2J_G0006753	lincRNA gene	Chr5:135734329-135749018 (-)
FVB/NJ	MGP_FVBNJ_G0006777	lincRNA gene	Chr5:134924228-134938787 (-)
LP/J	MGP_LPJ_G0006837	lincRNA gene	Chr5:142467423-142482034 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006760	lincRNA gene	Chr5:155948974-155966158 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006973	lincRNA gene	Chr5:140075560-140093846 (-)
PWK/PhJ	MGP_PWKPhJ_G0006613	lincRNA gene	Chr5:134810732-134826705 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0006519	lincRNA gene	Chr5:137637548-137655727 (-)
WSB/EiJ	MGP_WSBEiJ_G0006724	lincRNA gene	Chr5:140808876-140828901 (-)

Homology

• Gene Tree
  Gm42456
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  5

• Ensembl
  ENSMUSG00000105736 (Evidence)
• NCBI Gene
  115490145

Representative Sequences			Length	Strain/Species
genomic	115490145	NCBI Gene Model | MGI Sequence Detail	10077	C57BL/6J
transcript	XR_004942658	RefSeq | MGI Sequence Detail	1589	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm42456:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr53968	Chr5:137286918-137286930 (-)	0 bp