Gm42420 Gene Detail

Summary

• Symbol
  Gm42420
• Name
  predicted gene, 42420
• Synonyms
  Gm43816

• Feature Type
  protein coding gene
• IDs
  MGI:5649067
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:39562687-39573529 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5649067	protein coding gene	Chr6:39562687-39573529 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0030600	protein coding gene	Chr6:37988901-38001567 (+)
A/J	MGP_AJ_G0030573	protein coding gene	Chr6:36317273-36328894 (+)
AKR/J	MGP_AKRJ_G0030500	protein coding gene	Chr6:37478986-37489828 (+)
BALB/cJ	MGP_BALBcJ_G0030583	protein coding gene	Chr6:36539519-36550643 (+)
C3H/HeJ	MGP_C3HHeJ_G0030296	protein coding gene	Chr6:37505499-37516350 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0031037	protein coding gene	Chr6:38926163-38938318 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028249	protein coding gene	Chr6:34215270-34226062 (+)
CAST/EiJ	MGP_CASTEiJ_G0029698	protein coding gene	Chr6:37403943-37417311 (+)
CBA/J	MGP_CBAJ_G0030274	protein coding gene	Chr6:40474939-40485715 (+)
DBA/2J	MGP_DBA2J_G0030418	protein coding gene	Chr6:36138551-36149926 (+)
FVB/NJ	MGP_FVBNJ_G0030372	protein coding gene	Chr6:35927029-35938251 (+)
LP/J	MGP_LPJ_G0030505	protein coding gene	Chr6:38008939-38020247 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030408	protein coding gene	Chr6:42774479-42786132 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0031067	protein coding gene	Chr6:37430648-37442276 (+)
PWK/PhJ	MGP_PWKPhJ_G0029412	protein coding gene	Chr6:35825469-35836807 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0029248	protein coding gene	Chr6:37151932-37160661 (+)
WSB/EiJ	MGP_WSBEiJ_G0029774	protein coding gene	Chr6:37383364-37394945 (+)

Homology

• Gene Tree
  Gm42420
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000107071 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107071	Ensembl Gene Model | MGI Sequence Detail	10843	C57BL/6J
transcript	ENSMUST00000126621	Ensembl | MGI Sequence Detail	634	Not Applicable
polypeptide	ENSMUSP00000144288	Ensembl | MGI Sequence Detail	99	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Other
Accession IDs

MGI:5663953

References

• Summaries
  All 5

  Phenotypes 1
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;