Gm42376 Gene Detail

Summary

• Symbol
  Gm42376
• Name
  predicted gene, 42376

• Feature Type
  lncRNA gene
• IDs
  MGI:5625261
  NCBI Gene: 105247245
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr7:30091599-30093975 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  89 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5625261	lncRNA gene	Chr7:30091599-30098071 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm42376
  

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  3

• Ensembl
  ENSMUSG00000123985 (Evidence)
• NCBI Gene
  105247245

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000123985	Ensembl Gene Model | MGI Sequence Detail	2377	C57BL/6J
transcript	ENSMUST00000261282	Ensembl | MGI Sequence Detail	388	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm42376:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr71735	Chr7:30093989-30094000 (-)	-20 bp
Tssr71734	Chr7:30093947-30093977 (-)	13 bp
Tssr71733	Chr7:30093855-30093866 (-)	114 bp
Tssr2182	Chr7:30093795-30093805 (-)	175 bp
Tssr71732	Chr7:30093733-30093735 (-)	241 bp