Gm39772 Gene Detail

Summary

• Symbol
  Gm39772
• Name
  predicted gene, 39772

• Feature Type
  lncRNA gene
• IDs
  MGI:5622657
  NCBI Gene: 105244098
• Alliance
  gene page
• Transcription Start Sites
  8 TSS

Location &
Maps

• Sequence Map
  Chr2:26497117-26499219 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5622657	lncRNA gene	Chr2:26497117-26507374 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm39772
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000133044 (Evidence)
• NCBI Gene
  105244098

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000133044	Ensembl Gene Model | MGI Sequence Detail	2103	C57BL/6J
transcript	ENSMUST00000315643	Ensembl | MGI Sequence Detail	1354	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm39772:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr23149	Chr2:26498682-26498687 (-)	534 bp
Tssr23148	Chr2:26498631-26498646 (-)	580 bp
Tssr23147	Chr2:26498266-26498273 (-)	949 bp
Tssr23146	Chr2:26498184-26498205 (-)	1,024 bp
Tssr23145	Chr2:26498164-26498175 (-)	1,049 bp
Tssr23144	Chr2:26498078-26498085 (-)	1,137 bp
Tssr23143	Chr2:26497997-26498013 (-)	1,214 bp
Tssr23142	Chr2:26497826-26497837 (-)	1,387 bp