Gm38509 Gene Detail

Summary

• Symbol
  Gm38509
• Name
  predicted gene, 38509

• Feature Type
  lncRNA gene
• IDs
  MGI:5621394
  NCBI Gene: 102638436
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:34826224-34836495 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5621394	lncRNA gene	Chr3:34826224-34836495 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006155	lincRNA gene	Chr3:32464263-32477218 (+)
A/J	MGP_AJ_G0006147	lincRNA gene	Chr3:31923246-31933068 (+)
AKR/J	MGP_AKRJ_G0006123	lincRNA gene	Chr3:32493133-32505266 (+)
BALB/cJ	MGP_BALBcJ_G0006124	lincRNA gene	Chr3:31584919-31595120 (+)
C3H/HeJ	MGP_C3HHeJ_G0006073	lincRNA gene	Chr3:32528512-32540513 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006285	lincRNA gene	Chr3:34065994-34076017 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005598	lincRNA gene	Chr3:29692839-29704215 (+)
CAST/EiJ	MGP_CASTEiJ_G0006008	lincRNA gene	Chr3:32374405-32385887 (+)
CBA/J	MGP_CBAJ_G0006058	lincRNA gene	Chr3:34961551-34974774 (+)
DBA/2J	MGP_DBA2J_G0006078	lincRNA gene	Chr3:31405938-31416379 (+)
FVB/NJ	MGP_FVBNJ_G0006101	lincRNA gene	Chr3:30857891-30869804 (+)
LP/J	MGP_LPJ_G0006159	lincRNA gene	Chr3:33254798-33265681 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006091	lincRNA gene	Chr3:37450872-37470045 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006289	lincRNA gene	Chr3:32278578-32288377 (+)
PWK/PhJ	MGP_PWKPhJ_G0005953	lincRNA gene	Chr3:30995755-31011666 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0005862	lincRNA gene	Chr3:31688056-31697852 (+)
WSB/EiJ	MGP_WSBEiJ_G0006055	lincRNA gene	Chr3:32309859-32321142 (+)

Homology

• Gene Tree
  Gm38509
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000106519 (Evidence)
• NCBI Gene
  102638436

Representative Sequences			Length	Strain/Species
genomic	102638436	NCBI Gene Model | MGI Sequence Detail	10272	C57BL/6J
transcript	NR_110488	RefSeq | MGI Sequence Detail	1172	Not Specified

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9