Gm38204 Gene Detail

Summary

• Symbol
  Gm38204
• Name
  predicted gene, 38204

• Feature Type
  lncRNA gene
• IDs
  MGI:5611432
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:170800942-170805315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  180 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5611432	lncRNA gene	Chr1:170800942-170805315 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002790	antisense lncRNA gene	Chr1:176723512-176729880 (+)
A/J	MGP_AJ_G0002767	antisense lncRNA gene	Chr1:169514888-169519287 (+)
AKR/J	MGP_AKRJ_G0002748	antisense lncRNA gene	Chr1:174609642-174614015 (+)
BALB/cJ	MGP_BALBcJ_G0002754	antisense lncRNA gene	Chr1:169989711-169994084 (+)
C3H/HeJ	MGP_C3HHeJ_G0002712	antisense lncRNA gene	Chr1:174842276-174846681 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002896	antisense lncRNA gene	Chr1:182578264-182582637 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002443	antisense lncRNA gene	Chr1:161225104-161230197 (+)
CAST/EiJ	MGP_CASTEiJ_G0002684	antisense lncRNA gene	Chr1:174477618-174482072 (+)
CBA/J	MGP_CBAJ_G0002707	antisense lncRNA gene	Chr1:189067560-189071933 (+)
DBA/2J	MGP_DBA2J_G0002714	antisense lncRNA gene	Chr1:168364311-168368684 (+)
FVB/NJ	MGP_FVBNJ_G0002734	antisense lncRNA gene	Chr1:166723812-166728209 (+)
LP/J	MGP_LPJ_G0002790	antisense lncRNA gene	Chr1:177842052-177847073 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002724	antisense lncRNA gene	Chr1:196369140-196373550 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002901	antisense lncRNA gene	Chr1:174491323-174495819 (+)
PWK/PhJ	MGP_PWKPhJ_G0002642	antisense lncRNA gene	Chr1:167607430-167611875 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002592	antisense lncRNA gene	Chr1:173241297-173245749 (+)
WSB/EiJ	MGP_WSBEiJ_G0002713	antisense lncRNA gene	Chr1:174614309-174618729 (+)

Homology

• Gene Tree
  Gm38204
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm38204
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000103676 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103676	Ensembl Gene Model | MGI Sequence Detail	4374	C57BL/6J
transcript	ENSMUST00000194835	Ensembl | MGI Sequence Detail	619	Not Applicable

References

• Summaries
  All 11

  Phenotypes 10
• Earliest
  J:247864 Ho NI, et al., C1q-Dependent Dendritic Cell Cross-Presentation of In Vivo-Formed Antigen-Antibody Complexes. J Immunol. 2017 Jun 01;198(11):4235-4243
• Latest
  J:330538 Sahin M, et al., Antibody bivalency improves antiviral efficacy by inhibiting virion release independently of Fc gamma receptors. Cell Rep. 2022 Feb 1;38(5):110303