Gm37573 Gene Detail

Summary

• Symbol
  Gm37573
• Name
  predicted gene, 37573

• Feature Type
  lncRNA gene
• IDs
  MGI:5610801
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:25749359-25754467 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5610801	lncRNA gene	Chr3:25749359-25754467 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036945	sense intronic lncRNA gene	Chr3:22944817-22951109 (-)
A/J	MGP_AJ_G0036933	sense intronic lncRNA gene	Chr3:22852182-22857956 (-)
AKR/J	MGP_AKRJ_G0036880	sense intronic lncRNA gene	Chr3:23123826-23129608 (-)
BALB/cJ	MGP_BALBcJ_G0036924	sense intronic lncRNA gene	Chr3:22501466-22506681 (-)
C3H/HeJ	MGP_C3HHeJ_G0036610	sense intronic lncRNA gene	Chr3:23127314-23132649 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0037437	sense intronic lncRNA gene	Chr3:24243776-24249771 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0034494	sense intronic lncRNA gene	Chr3:20952001-20952836 (-)
CAST/EiJ	MGP_CASTEiJ_G0035799	sense intronic lncRNA gene	Chr3:22932066-22938468 (-)
CBA/J	MGP_CBAJ_G0036585	sense intronic lncRNA gene	Chr3:24890308-24899668 (-)
DBA/2J	MGP_DBA2J_G0036760	sense intronic lncRNA gene	Chr3:22399770-22404936 (-)
FVB/NJ	MGP_FVBNJ_G0036711	sense intronic lncRNA gene	Chr3:21903920-21909605 (-)
LP/J	MGP_LPJ_G0036808	sense intronic lncRNA gene	Chr3:23634919-23641774 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036718	sense intronic lncRNA gene	Chr3:27402890-27419032 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037554	sense intronic lncRNA gene	Chr3:22785468-22790328 (-)
PWK/PhJ	MGP_PWKPhJ_G0035492	sense intronic lncRNA gene	Chr3:21871793-21876038 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0035304	sense intronic lncRNA gene	Chr3:22382174-22387678 (-)
WSB/EiJ	MGP_WSBEiJ_G0035999	sense intronic lncRNA gene	Chr3:22834367-22840399 (-)

Homology

• Gene Tree
  Gm37573
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000102397 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102397	Ensembl Gene Model | MGI Sequence Detail	5109	C57BL/6J
transcript	ENSMUST00000193993	Ensembl | MGI Sequence Detail	931	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm37573:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32782	Chr3:25754391-25754414 (-)	64 bp
Tssr32781	Chr3:25752295-25752303 (-)	2,168 bp
Tssr32780	Chr3:25752179-25752200 (-)	2,277 bp
Tssr32779	Chr3:25752126-25752151 (-)	2,328 bp