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Pcdha4b Gene Detail
Summary
  • Symbol
    Pcdha4b
  • Name
    protocadherin alpha 4B
  • Synonyms
    Gm37013
  • Feature Type
    protein coding gene
  • IDs
    MGI:5610241
    NCBI Gene: 100384868
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr18:37085794-37973253 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    7135 from dbSNP Build 142
  • Strain Annotations
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_5610241
 protein coding gene Chr18:37085701-37974926 (+)
129S1/SvImJ no annotation
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    PCDHA4, protocadherin alpha 4
  • Vertebrate Orthologs
    12
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCDHA4, protocadherin alpha 4
  • Synonyms
    CNR1, CNRN1, CRNR1, PCDH-ALPHA4
  • Links
    NCBI Gene ID: 56144
    neXtProt AC: NX_Q9UN74
    UniProt: Q9UN74

  • Chr Location
    5q31.3; chr5:140807037-141012347 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000103458 Ensembl Gene Model | MGI Sequence Detail 887460 C57BL/6J ±  kb
transcript ENSMUST00000115661 Ensembl | MGI Sequence Detail 2856 Not Applicable  
polypeptide ENSMUSP00000111325 Ensembl | MGI Sequence Detail 919 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 8
    Phenotypes 2
  • Earliest
    J:78249 Wang X, et al., Molecular mechanisms governing Pcdh-gamma gene expression: evidence for a multiple promoter and cis-alternative splicing model. Genes Dev. 2002 Aug 1;16(15):1890-905
  • Latest
    J:313451 Xu L, et al., Abnormal neocortex arealization and Sotos-like syndrome-associated behavior in Setd2 mutant mice. Sci Adv. 2021 Jan;7(1)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory