Gm36840 Gene Detail

Summary

• Symbol
  Gm36840
• Name
  predicted gene, 36840

• Feature Type
  lncRNA gene
• IDs
  MGI:5595999
  NCBI Gene: 102640881
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr5:32478108-32512227 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5595999	lncRNA gene	Chr5:32475046-32512249 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004054	antisense lncRNA gene	Chr5:30404211-30438272 (-)
A/J	MGP_AJ_G0004034	antisense lncRNA gene	Chr5:29400391-29434371 (-)
AKR/J	MGP_AKRJ_G0004013	antisense lncRNA gene	Chr5:30569236-30604655 (-)
BALB/cJ	MGP_BALBcJ_G0004021	antisense lncRNA gene	Chr5:29927383-29962512 (-)
C3H/HeJ	MGP_C3HHeJ_G0003967	antisense lncRNA gene	Chr5:30579116-30613871 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004169	antisense lncRNA gene	Chr5:32200636-32236171 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003649	antisense lncRNA gene	Chr5:27061965-27096944 (-)
CAST/EiJ	MGP_CASTEiJ_G0003930	antisense lncRNA gene	Chr5:29667996-29703240 (-)
CBA/J	MGP_CBAJ_G0003961	antisense lncRNA gene	Chr5:32888390-32924506 (-)
DBA/2J	MGP_DBA2J_G0003975	antisense lncRNA gene	Chr5:29569772-29603670 (-)
FVB/NJ	MGP_FVBNJ_G0003995	antisense lncRNA gene	Chr5:28984432-29019705 (-)
LP/J	MGP_LPJ_G0004056	antisense lncRNA gene	Chr5:30840848-30876441 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003983	antisense lncRNA gene	Chr5:33695274-33731284 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004164	antisense lncRNA gene	Chr5:30065534-30101043 (-)
PWK/PhJ	MGP_PWKPhJ_G0003884	antisense lncRNA gene	Chr5:28729748-28766561 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003829	antisense lncRNA gene	Chr5:29546923-29582184 (-)
WSB/EiJ	MGP_WSBEiJ_G0003966	antisense lncRNA gene	Chr5:30154810-30192412 (-)

Homology

• Gene Tree
  Gm36840
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  17 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  4 involving Gm36840
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000107078 (Evidence)
• NCBI Gene
  102640881

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107078	Ensembl Gene Model | MGI Sequence Detail	34120	C57BL/6J
transcript	ENSMUST00000202688	Ensembl | MGI Sequence Detail	250	Not Applicable

References

• Summaries
  All 20

  Phenotypes 17
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707

TSS for Gm36840:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50586	Chr5:32512185-32512199 (-)	35 bp
Tssr50585	Chr5:32512159-32512176 (-)	59 bp