Gm35588 Gene Detail

Summary

• Symbol
  Gm35588
• Name
  predicted gene, 35588

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5594747
  NCBI Gene: 102639229
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:42903165-42915069 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  100 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5594747	protein coding gene	Chr7:42903163-42915072 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm35588
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  5
• Gene trapped
  5
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  4

• Ensembl
  ENSMUSG00000120477 (Evidence)
• NCBI Gene
  102639229

Representative Sequences			Length	Strain/Species
genomic	102639229	NCBI Gene Model | MGI Sequence Detail	11905	C57BL/6J
transcript	NM_001378676	RefSeq | MGI Sequence Detail	2775	ZRU/MplStud
polypeptide	NP_001365605	RefSeq | MGI Sequence Detail	396	ZRU/MplStud

References

• Summaries
  All 6

  Phenotypes 3
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm35588:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr65980	Chr7:42903163-42903197 (+)	15 bp