Lcn15 Gene Detail

Summary

• Symbol
  Lcn15
• Name
  lipocalin 15
• Synonyms
  Gm33749

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:5592908
  NCBI Gene: 102636769
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:25534156-25538813 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  220 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5592908	protein coding gene	Chr2:25534109-25538813 (+)
129S1/SvImJ	ENSMUSG00200053597	pseudogene	Chr2:22518289-22522965 (+)
A/J	ENSMUSG00195050599	pseudogene	Chr2:22608390-22613062 (+)
AKR/J	ENSMUSG00220053647	pseudogene	Chr2:22726221-22730893 (+)
BALB/cJ	ENSMUSG00180054301	pseudogene	Chr2:22619950-22624627 (+)
C3H/HeJ	ENSMUSG00175053695	pseudogene	Chr2:22584103-22588781 (+)
C57BL/6NJ	ENSMUSG00215049077	pseudogene	Chr2:22642838-22647514 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005053440	pseudogene	Chr2:22368965-22372089 (+)
CBA/J	ENSMUSG00210017672	pseudogene	Chr2:22623076-22627751 (+)
DBA/2J	ENSMUSG00185053913	pseudogene	Chr2:22522568-22527239 (+)
FVB/NJ	ENSMUSG00205051659	pseudogene	Chr2:22376911-22381589 (+)
JF1/MsJ	ENSUMUG00000056177	pseudogene	Chr2:22442710-22445790 (+)
LP/J	ENSMUSG00230045721	pseudogene	Chr2:24454271-24458947 (+)
NOD/ShiLtJ	ENSMUSG00190053498	pseudogene	Chr2:22613436-22618107 (+)
NZO/HlLtJ	ENSMUSG00225011164	pseudogene	Chr2:32204707-32209378 (+)
PWK/PhJ	ENSLUMG00010052717	pseudogene	Chr2:22539652-22542737 (+)
SPRET/EiJ	ENSMSPG00010046725	pseudogene	Chr2:23220740-23223802 (+)
WSB/EiJ	ENSIUOG00005052593	pseudogene	Chr2:22480483-22485157 (+)

Homology

• Human Ortholog
  LCN15, lipocalin 15

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  LCN15, lipocalin 15
  
• Synonyms
  PRO6093, UNQ2541
• Links
  HGNC:33777

  NCBI Gene ID: 389812

  UniProt: Q6UWW0

  
  
• Chr Location
  9q34.3; chr9:136759634-136766255 (-)  GRCh38

---

• MGI Vertebrate Homology
  Lcn15 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: LCN15
• Gene Tree
  Lcn15
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000118473 (Evidence)
• NCBI Gene
  102636769

Representative Sequences			Length	Strain/Species
genomic	102636769	NCBI Gene Model | MGI Sequence Detail	4658	C57BL/6J
transcript	XM_006498514	RefSeq | MGI Sequence Detail	626	C57BL/6J
polypeptide	XP_006498577	RefSeq | MGI Sequence Detail	202	C57BL/6J

Other
Accession IDs

MGI:6154703

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;