Gm30003 Gene Detail

Summary

• Symbol
  Gm30003
• Name
  predicted gene, 30003
• Synonyms
  Gm43278

• Feature Type
  lncRNA gene
• IDs
  MGI:5589162
  NCBI Gene: 102631739
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr5:134775896-134851821 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  544 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5589162	lncRNA gene	Chr5:134774304-134851822 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004196	antisense lncRNA gene	Chr5:139182485-139276583 (+)
A/J	MGP_AJ_G0004175	antisense lncRNA gene	Chr5:133270252-133347180 (+)
AKR/J	MGP_AKRJ_G0004156	antisense lncRNA gene	Chr5:137592972-137679562 (+)
BALB/cJ	MGP_BALBcJ_G0004161	antisense lncRNA gene	Chr5:134622789-134700472 (+)
C3H/HeJ	MGP_C3HHeJ_G0004109	antisense lncRNA gene	Chr5:138142586-138232015 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004309	antisense lncRNA gene	Chr5:144422094-144506725 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003786	antisense lncRNA gene	Chr5:127555255-127639185 (+)
CAST/EiJ	MGP_CASTEiJ_G0004071	antisense lncRNA gene	Chr5:137571966-137661351 (+)
CBA/J	MGP_CBAJ_G0004103	antisense lncRNA gene	Chr5:150050758-150157683 (+)
DBA/2J	MGP_DBA2J_G0004119	antisense lncRNA gene	Chr5:133162373-133241260 (+)
FVB/NJ	MGP_FVBNJ_G0004135	antisense lncRNA gene	Chr5:132293938-132372437 (+)
LP/J	MGP_LPJ_G0004197	antisense lncRNA gene	Chr5:139655898-139740758 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004125	antisense lncRNA gene	Chr5:153098037-153189499 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004307	antisense lncRNA gene	Chr5:137324770-137409542 (+)
PWK/PhJ	MGP_PWKPhJ_G0004025	antisense lncRNA gene	Chr5:132201823-132281755 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003968	antisense lncRNA gene	Chr5:134899594-134983539 (+)
WSB/EiJ	MGP_WSBEiJ_G0004107	antisense lncRNA gene	Chr5:138077207-138168325 (+)

Homology

• Gene Tree
  Gm30003
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Gm30003
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  30
• RefSeq
  8

• Ensembl
  ENSMUSG00000107318 (Evidence)
• NCBI Gene
  102631739

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000107318	Ensembl Gene Model | MGI Sequence Detail	75926	C57BL/6J
transcript	ENSMUST00000200700	Ensembl | MGI Sequence Detail	1433	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGI:5663415

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 8
• Earliest
  J:216195 Segura-Puimedon M, et al., Heterozygous deletion of the Williams-Beuren syndrome critical interval in mice recapitulates most features of the human disorder. Hum Mol Genet. 2014 Dec 15;23(24):6481-94
• Latest
  J:337436 Abdalla N, et al., Dysfunctional Mitochondria in the Cardiac Fibers of a Williams-Beuren Syndrome Mouse Model. Int J Mol Sci. 2023 Jun 13;24(12)

TSS for Gm30003:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr49103	Chr5:134784313-134784316 (+)	8,419 bp