Gm29571 Gene Detail

Summary

• Symbol
  Gm29571
• Name
  predicted gene 29571

• Feature Type
  lncRNA gene
• IDs
  MGI:5580277
  NCBI Gene: 102640597
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:25412284-25549241 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic

Strain
Comparison

• SNPs within 2kb
  1337 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580277	lncRNA gene	Chr10:25412215-25579239 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0002844	antisense lncRNA gene	Chr10:23569852-23703335 (+)
A/J	MGP_AJ_G0002821	antisense lncRNA gene	Chr10:22855228-22982760 (+)
AKR/J	MGP_AKRJ_G0002801	antisense lncRNA gene	Chr10:23238522-23365986 (+)
BALB/cJ	MGP_BALBcJ_G0002808	antisense lncRNA gene	Chr10:22994138-23116672 (+)
C3H/HeJ	MGP_C3HHeJ_G0002765	antisense lncRNA gene	Chr10:23457361-23584109 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0002950	antisense lncRNA gene	Chr10:24300875-24439237 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002495	antisense lncRNA gene	Chr10:21523790-21644654 (+)
CAST/EiJ	MGP_CASTEiJ_G0002737	antisense lncRNA gene	Chr10:23420262-23556995 (+)
CBA/J	MGP_CBAJ_G0002760	antisense lncRNA gene	Chr10:25431814-25577988 (+)
DBA/2J	MGP_DBA2J_G0002767	antisense lncRNA gene	Chr10:22587734-22715168 (+)
FVB/NJ	MGP_FVBNJ_G0002787	antisense lncRNA gene	Chr10:22285468-22408085 (+)
LP/J	MGP_LPJ_G0002843	antisense lncRNA gene	Chr10:23553896-23679804 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002777	antisense lncRNA gene	Chr10:25473738-25608480 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002954	antisense lncRNA gene	Chr10:23108164-23241268 (+)
PWK/PhJ	MGP_PWKPhJ_G0002695	antisense lncRNA gene	Chr10:22388435-22518923 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0002645	antisense lncRNA gene	Chr10:22928050-23055170 (+)
WSB/EiJ	MGP_WSBEiJ_G0002766	antisense lncRNA gene	Chr10:23249630-23375305 (+)

Homology

• Gene Tree
  Gm29571
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm29571
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  39
• RefSeq
  1

• Ensembl
  ENSMUSG00000101537 (Evidence)
• NCBI Gene
  102640597

Representative Sequences			Length	Strain/Species
genomic	102640597	NCBI Gene Model | MGI Sequence Detail	136958	C57BL/6J
transcript	NR_136909	RefSeq | MGI Sequence Detail	1909	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 12

  Phenotypes 7
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm29571:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr92785	Chr10:25412263-25412294 (+)	-5 bp