Gm29521 Gene Detail

Summary

• Symbol
  Gm29521
• Name
  predicted gene 29521

• Feature Type
  lncRNA gene
• IDs
  MGI:5580227
  NCBI Gene: 102633238
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr9:101647568-101739929 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, Syntenic

Strain
Comparison

• SNPs within 2kb
  2496 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580227	lncRNA gene	Chr9:101647568-101739929 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015757	unclassified non-coding RNA gene	Chr9:103289123-103380637 (-)
A/J	MGP_AJ_G0015734	unclassified non-coding RNA gene	Chr9:99594907-99683752 (-)
AKR/J	MGP_AKRJ_G0015697	unclassified non-coding RNA gene	Chr9:102042316-102147398 (-)
BALB/cJ	MGP_BALBcJ_G0015695	unclassified non-coding RNA gene	Chr9:99298698-99394615 (-)
C3H/HeJ	MGP_C3HHeJ_G0015516	unclassified non-coding RNA gene	Chr9:102469153-102561298 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016150	unclassified non-coding RNA gene	Chr9:106216519-106307148 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013875	unclassified non-coding RNA gene	Chr9:97207481-97296518 (-)
CAST/EiJ	MGP_CASTEiJ_G0015071	unclassified non-coding RNA gene	Chr9:102277320-102366208 (-)
CBA/J	MGP_CBAJ_G0015496	unclassified non-coding RNA gene	Chr9:109919988-110013055 (-)
DBA/2J	MGP_DBA2J_G0015595	unclassified non-coding RNA gene	Chr9:99095829-99185152 (-)
FVB/NJ	MGP_FVBNJ_G0015600	unclassified non-coding RNA gene	Chr9:97898126-97989655 (-)
LP/J	MGP_LPJ_G0015675	unclassified non-coding RNA gene	Chr9:103509006-103601296 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015623	unclassified non-coding RNA gene	Chr9:111778024-111871547 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016193	unclassified non-coding RNA gene	Chr9:102309125-102402283 (-)
PWK/PhJ	MGP_PWKPhJ_G0014854	unclassified non-coding RNA gene	Chr9:99334680-99424199 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014641	unclassified non-coding RNA gene	Chr9:102358115-102445470 (-)
WSB/EiJ	MGP_WSBEiJ_G0015175	unclassified non-coding RNA gene	Chr9:102191920-102280476 (-)

Homology

• Gene Tree
  Gm29521
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm29521
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27

• Ensembl
  ENSMUSG00000100807 (Evidence)
• NCBI Gene
  102633238

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100807	Ensembl Gene Model | MGI Sequence Detail	92362	C57BL/6J
transcript	ENSMUST00000187746	Ensembl | MGI Sequence Detail	3123	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm29521:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr91121	Chr9:101739856-101739865 (-)	68 bp
Tssr91120	Chr9:101739696-101739707 (-)	227 bp
Tssr91119	Chr9:101739642-101739664 (-)	276 bp
Tssr91118	Chr9:101739610-101739625 (-)	311 bp
Tssr91117	Chr9:101739593-101739600 (-)	332 bp