Gm29520 Gene Detail

Summary

• Symbol
  Gm29520
• Name
  predicted gene 29520

• Feature Type
  lncRNA gene
• IDs
  MGI:5580226
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:9709480-9710807 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  35 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580226	lncRNA gene	Chr1:9709480-9710807 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004771	lincRNA gene	Chr1:6874605-6875924 (-)
A/J	MGP_AJ_G0004752	lincRNA gene	Chr1:6946469-6947796 (-)
AKR/J	MGP_AKRJ_G0004731	lincRNA gene	Chr1:6828836-6830155 (-)
BALB/cJ	MGP_BALBcJ_G0004734	lincRNA gene	Chr1:6686166-6687493 (-)
C3H/HeJ	MGP_C3HHeJ_G0004682	lincRNA gene	Chr1:6751937-6753352 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004884	lincRNA gene	Chr1:7211714-7213042 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004320	lincRNA gene	Chr1:5799586-5800906 (-)
CAST/EiJ	MGP_CASTEiJ_G0004639	lincRNA gene	Chr1:6935498-6936820 (-)
CBA/J	MGP_CBAJ_G0004675	lincRNA gene	Chr1:7363762-7365175 (-)
DBA/2J	MGP_DBA2J_G0004693	lincRNA gene	Chr1:6574461-6575784 (-)
FVB/NJ	MGP_FVBNJ_G0004713	lincRNA gene	Chr1:6489991-6491318 (-)
LP/J	MGP_LPJ_G0004772	lincRNA gene	Chr1:7096575-7097895 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004698	lincRNA gene	Chr1:8009731-8011053 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004888	lincRNA gene	Chr1:6733176-6734503 (-)
PWK/PhJ	MGP_PWKPhJ_G0004591	lincRNA gene	Chr1:6430510-6431832 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004520	lincRNA gene	Chr1:6899576-6900901 (-)
WSB/EiJ	MGP_WSBEiJ_G0004680	lincRNA gene	Chr1:6759928-6761255 (-)

Homology

• Gene Tree
  Gm29520
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099827 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099827	Ensembl Gene Model | MGI Sequence Detail	1328	C57BL/6J
transcript	ENSMUST00000191209	Ensembl | MGI Sequence Detail	1067	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;