Gm29509 Gene Detail

Summary

• Symbol
  Gm29509
• Name
  predicted gene 29509

• Feature Type
  lncRNA gene
• IDs
  MGI:5580215
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr6:117876162-117876482 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, Syntenic

Strain
Comparison

• SNPs within 2kb
  6 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580215	lncRNA gene	Chr6:117876162-117876482 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0007053	lincRNA gene	Chr6:120617173-120617493 (+)
A/J	MGP_AJ_G0007049	lincRNA gene	Chr6:116008224-116008544 (+)
AKR/J	MGP_AKRJ_G0007018	lincRNA gene	Chr6:119126598-119126918 (+)
BALB/cJ	MGP_BALBcJ_G0007024	lincRNA gene	Chr6:115783296-115783616 (+)
C3H/HeJ	MGP_C3HHeJ_G0006899	lincRNA gene	Chr6:65177153-65177473 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0007190	lincRNA gene	Chr6:123724398-123724718 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006420	lincRNA gene	Chr6:112930554-112930875 (+)
CAST/EiJ	MGP_CASTEiJ_G0006880	lincRNA gene	Chr6:119499099-119499420 (+)
CBA/J	MGP_CBAJ_G0006949	lincRNA gene	Chr6:128606609-128606929 (+)
DBA/2J	MGP_DBA2J_G0006971	lincRNA gene	Chr6:114907614-114907934 (+)
FVB/NJ	MGP_FVBNJ_G0006995	lincRNA gene	Chr6:114040566-114040887 (+)
LP/J	MGP_LPJ_G0007056	lincRNA gene	Chr6:120646534-120646854 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006975	lincRNA gene	Chr6:132719354-132719674 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0007195	lincRNA gene	Chr6:119150947-119151267 (+)
PWK/PhJ	MGP_PWKPhJ_G0006820	lincRNA gene	Chr6:113913513-113913834 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006730	lincRNA gene	Chr6:117862090-117862408 (+)
WSB/EiJ	MGP_WSBEiJ_G0006938	lincRNA gene	Chr6:119415761-119416082 (+)

Homology

• Gene Tree
  Gm29509
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099810 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099810	Ensembl Gene Model | MGI Sequence Detail	321	C57BL/6J
transcript	ENSMUST00000185716	Ensembl | MGI Sequence Detail	321	Not Applicable

References

• Summaries
  All 2
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;