Gm29500 Gene Detail

Summary

• Symbol
  Gm29500
• Name
  predicted gene 29500

• Feature Type
  lncRNA gene
• IDs
  MGI:5580206
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:163434946-163437838 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5580206	lncRNA gene	Chr1:163434946-163437838 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0005017	lincRNA gene	Chr1:169009397-169012289 (+)
A/J	MGP_AJ_G0004999	lincRNA gene	Chr1:162115011-162118241 (+)
AKR/J	MGP_AKRJ_G0004977	lincRNA gene	Chr1:167053171-167056050 (+)
BALB/cJ	MGP_BALBcJ_G0004981	lincRNA gene	Chr1:162617692-162620566 (+)
C3H/HeJ	MGP_C3HHeJ_G0004929	lincRNA gene	Chr1:167216196-167219349 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0005131	lincRNA gene	Chr1:174667662-174670554 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004542	lincRNA gene	Chr1:154120381-154123358 (+)
CAST/EiJ	MGP_CASTEiJ_G0004877	lincRNA gene	Chr1:166860000-166863759 (+)
CBA/J	MGP_CBAJ_G0004920	lincRNA gene	Chr1:180906309-180909209 (+)
DBA/2J	MGP_DBA2J_G0004939	lincRNA gene	Chr1:161039352-161042254 (+)
FVB/NJ	MGP_FVBNJ_G0004960	lincRNA gene	Chr1:159463101-159465981 (+)
LP/J	MGP_LPJ_G0005017	lincRNA gene	Chr1:170089267-170092153 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004944	lincRNA gene	Chr1:188410327-188413213 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005136	lincRNA gene	Chr1:166850503-166853373 (+)
PWK/PhJ	MGP_PWKPhJ_G0004828	lincRNA gene	Chr1:160225039-160228201 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004755	lincRNA gene	Chr1:165760632-165764567 (+)
WSB/EiJ	MGP_WSBEiJ_G0004923	lincRNA gene	Chr1:167019094-167022007 (+)

Homology

• Gene Tree
  Gm29500
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm29500
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000101869 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000101869	Ensembl Gene Model | MGI Sequence Detail	2893	C57BL/6J
transcript	ENSMUST00000185992	Ensembl | MGI Sequence Detail	1344	Not Applicable

References

• Summaries
  All 4

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;