Sphkos Gene Detail

Summary

• Symbol
  Sphkos
• Name
  sphingosine kinase 1, opposite strand lncRNA
• Synonyms
  Gm29292

• Feature Type
  lncRNA gene
• IDs
  MGI:5579998
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr11:116420041-116423903 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579998	lncRNA gene	Chr11:116420041-116423903 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003103	antisense lncRNA gene	Chr11:120663930-120667768 (-)
A/J	MGP_AJ_G0003081	antisense lncRNA gene	Chr11:115381058-115384936 (-)
AKR/J	MGP_AKRJ_G0003062	antisense lncRNA gene	Chr11:118815712-118819584 (-)
BALB/cJ	MGP_BALBcJ_G0003068	antisense lncRNA gene	Chr11:115780708-115784539 (-)
C3H/HeJ	MGP_C3HHeJ_G0003024	antisense lncRNA gene	Chr11:119172502-119176360 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003210	antisense lncRNA gene	Chr11:124345688-124349512 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002745	antisense lncRNA gene	Chr11:112380326-112384134 (-)
CAST/EiJ	MGP_CASTEiJ_G0002992	antisense lncRNA gene	Chr11:120547653-120551545 (-)
CBA/J	MGP_CBAJ_G0003021	antisense lncRNA gene	Chr11:129275267-129279121 (-)
DBA/2J	MGP_DBA2J_G0003026	antisense lncRNA gene	Chr11:114810049-114813878 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0003101	antisense lncRNA gene	Chr11:121047139-121050993 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003034	antisense lncRNA gene	Chr11:128312488-128316342 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003214	antisense lncRNA gene	Chr11:119480306-119484156 (-)
PWK/PhJ	MGP_PWKPhJ_G0002951	antisense lncRNA gene	Chr11:116134086-116138029 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002895	antisense lncRNA gene	Chr11:119228511-119232383 (-)
WSB/EiJ	MGP_WSBEiJ_G0003023	antisense lncRNA gene	Chr11:119443891-119447739 (-)

Homology

• Gene Tree
  Sphkos
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19

• Ensembl
  ENSMUSG00000100779 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100779	Ensembl Gene Model | MGI Sequence Detail	3863	C57BL/6J
transcript	ENSMUST00000186169	Ensembl | MGI Sequence Detail	766	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Sphkos:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr3739	Chr11:116424798-116424830 (-)	-911 bp
Tssr111938	Chr11:116424521-116424535 (-)	-625 bp
Tssr111937	Chr11:116423895-116423949 (-)	-19 bp
Tssr111936	Chr11:116420388-116420392 (-)	3,513 bp