Gm29253 Gene Detail

Summary

• Symbol
  Gm29253
• Name
  predicted gene 29253

• Feature Type
  lncRNA gene
• IDs
  MGI:5579959
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:75148375-75161790 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_5579959	lncRNA gene	Chr1:75148375-75161790 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015103	unclassified non-coding RNA gene	Chr1:75733972-75748540 (-)
A/J	MGP_AJ_G0015076	unclassified non-coding RNA gene	Chr1:73093517-73107318 (-)
AKR/J	MGP_AKRJ_G0015039	unclassified non-coding RNA gene	Chr1:75122501-75135918 (-)
BALB/cJ	MGP_BALBcJ_G0015039	unclassified non-coding RNA gene	Chr1:73155523-73168945 (-)
C3H/HeJ	MGP_C3HHeJ_G0014862	unclassified non-coding RNA gene	Chr1:75453097-75467324 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015496	unclassified non-coding RNA gene	Chr1:78684481-78697894 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013242	unclassified non-coding RNA gene	Chr1:68654381-68667857 (-)
CAST/EiJ	MGP_CASTEiJ_G0014417	unclassified non-coding RNA gene	Chr1:74789753-74804778 (-)
CBA/J	MGP_CBAJ_G0014841	unclassified non-coding RNA gene	Chr1:81242694-81256103 (-)
DBA/2J	MGP_DBA2J_G0014934	unclassified non-coding RNA gene	Chr1:72412431-72425839 (-)
FVB/NJ	MGP_FVBNJ_G0014946	unclassified non-coding RNA gene	Chr1:71610693-71624122 (-)
LP/J	MGP_LPJ_G0015017	unclassified non-coding RNA gene	Chr1:76857898-76871304 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0014973	unclassified non-coding RNA gene	Chr1:84600928-84615582 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015534	unclassified non-coding RNA gene	Chr1:75192335-75205749 (-)
PWK/PhJ	MGP_PWKPhJ_G0014209	unclassified non-coding RNA gene	Chr1:71881997-71895523 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0013998	unclassified non-coding RNA gene	Chr1:74552785-74566215 (-)
WSB/EiJ	MGP_WSBEiJ_G0014521	unclassified non-coding RNA gene	Chr1:75003592-75018177 (-)

Homology

• Gene Tree
  Gm29253
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  9 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  2
• Genomic Mutations
  3 involving Gm29253
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000099519 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000099519	Ensembl Gene Model | MGI Sequence Detail	13416	C57BL/6J
transcript	ENSMUST00000185727	Ensembl | MGI Sequence Detail	5231	Not Applicable

References

• Summaries
  All 11

  Phenotypes 9
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:41878 Zoltewicz JS, et al., oto is a homeotic locus with a role in anteroposterior development that is partially redundant with Lim1. Development. 1999 Nov;126(22):5085-95